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AT5G25860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.961
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22318864 (2012): plasma membrane
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AC005405EMBL:CP002688EnsemblPlants:AT5G25860EnsemblPlants:AT5G25860.1entrez:832655Gene3D:3.80.10.10GeneID:832655
Genevisible:Q3E7J7GO:GO:0005773Gramene:AT5G25860.1hmmpanther:PTHR32141hmmpanther:PTHR32141:SF18HOGENOM:HOG000015201InParanoid:Q3E7J7
InterPro:IPR001810InterPro:IPR006566InterPro:IPR032675KEGG:ath:AT5G25860PaxDb:Q3E7J7Pfam:PF12937Pfam:Q3E7J7
Pfscan:PS50181PhylomeDB:Q3E7J7PRIDE:Q3E7J7PRO:PR:Q3E7J7PROSITE:PS50181ProteinModelPortal:Q3E7J7Proteomes:UP000006548
RefSeq:NP_197958.1SMART:SM00256SMART:SM00579SMR:Q3E7J7SUPFAM:SSF52058SUPFAM:SSF81383TAIR:AT5G25860
UniGene:At.51415UniProt:Q3E7J7
Coordinates (TAIR10) chr5:-:9016908..9018424
Molecular Weight (calculated) 51942.50 Da
IEP (calculated) 8.31
GRAVY (calculated) -0.20
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTRKVKSSS RDAVNCLPDE ILAKILSYLP TKRAVSTSLI SKRWRNLFAL MIQLFESQHH LYLDDSDLVY PEEGKGEMKD VQESFGDFVD KTLTDCNTIK
101: KLSILCPLKC CAHKDIDQWL HHAMERGVVD LDMRFKMGFT PTQNEWPCNV FTIKTLVKLT FRIEVGQNKM PYCPKGVLPV LKSLFLHAIW FACERLCHSM
201: LPGCPILEEL FLHDLRGYRY NDSPNFSISH KTLKRLTVHF NNSFELGRPM QFDTPSLLYL EYSGFAPCRY SRTSYLNSLV EVKLDVHIRH ECNTHMHLSP
301: IIDWIGNVKT LSLSPASVKM MYSRCVELHV FSNLVKLYFE SNEKEGWEVL PRLLNKSPKL ETLVLKGLHC ASDHGVCVDR NEVKVLEIYG FSGCGREVRQ
401: VKCLLREMQF LQVMKVEIDA HDDNKKLRVI NHLLDLPKRP SKFHIQFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)