AT5G25860.1
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Subcellular Consensus
(Prediction and Experimental)  :max.
SUBAcon:cytosol 0.961 What is SUBAcon? What is ASURE? SUBAcon computations |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:9016908..9018424 | ||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51942.50 Da | ||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.31 | ||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDTRKVKSSS RDAVNCLPDE ILAKILSYLP TKRAVSTSLI SKRWRNLFAL MIQLFESQHH LYLDDSDLVY PEEGKGEMKD VQESFGDFVD KTLTDCNTIK 101: KLSILCPLKC CAHKDIDQWL HHAMERGVVD LDMRFKMGFT PTQNEWPCNV FTIKTLVKLT FRIEVGQNKM PYCPKGVLPV LKSLFLHAIW FACERLCHSM 201: LPGCPILEEL FLHDLRGYRY NDSPNFSISH KTLKRLTVHF NNSFELGRPM QFDTPSLLYL EYSGFAPCRY SRTSYLNSLV EVKLDVHIRH ECNTHMHLSP 301: IIDWIGNVKT LSLSPASVKM MYSRCVELHV FSNLVKLYFE SNEKEGWEVL PRLLNKSPKL ETLVLKGLHC ASDHGVCVDR NEVKVLEIYG FSGCGREVRQ 401: VKCLLREMQF LQVMKVEIDA HDDNKKLRVI NHLLDLPKRP SKFHIQFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)