AT5G25800.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.988 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:8979761..8982724 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62805.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.83 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 567 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSKRKRGA ETAAEDCDDG TDKSNTGNSF FDIYGPEAKA ELDFKSPETT LNLQDVQGLV TWVLAEGFMP SWVFIKNKPL IPKVVLLYLP GLDAALYLSH 101: SKTLSSLKSC CGNPMALLAL SCVVDEMRTI DTILTCKGRK KKTVTSSVEP PPLVSSPEAC NLMGKSFVEL TKDIPFPVSY YTLSQKEMEQ NGYTFEKLEL 201: TPTLPAPSGS CPPEIVALDC EMCITKEGLE LTRVTLVDIQ GQVLLDKLVM PTNPITDYNT RYSGITAVMM EGVTTTLKDI QEEFLKLVFK ETILVGHSLE 301: NDLLSLKISH NLVIDTAVLY KHPHGRSYKT KLRILAKKFL AREIQESESG HDSAEDAKAA MDLALLKIKH GPDFGSPPEV IRKKLLAVLN ESGKTTSIID 401: NINIVKRYAS ESSNAIPVSS DDEALSKAVK EVKNKRSQFV WTQFSELNAH FQSRADDPQK LNSRLAEMIS LLTCNKKSGL KKSNVSPETK EILKKMNERV 501: QSLYAALPTN AMFIVCTGHG DTSIVHRVRK MLKDEDEIGF DREKLVKVLE ELQAQAEVAL CFVGIKQ |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)