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AT5G25610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:22923678 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BURP domain-containing protein
Curator
Summary (TAIR10)
responsive to dehydration 22 (RD22) mediated by ABA
Computational
Description (TAIR10)
RESPONSIVE TO DESSICATION 22 (RD22); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: unknown seed protein like 1 (TAIR:AT1G49320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17911eggNOG:ENOG410IF2VeggNOG:ENOG410YDUKEMBL:AC006601
EMBL:AK220718EMBL:AK222019EMBL:AY060560EMBL:AY090244
EMBL:BT009697EMBL:CP002688EMBL:D10703EnsemblPlants:AT5G25610
EnsemblPlants:AT5G25610.1entrez:832636GeneID:832636Genevisible:Q08298
GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0009651
Gramene:AT5G25610.1hmmpanther:PTHR31236hmmpanther:PTHR31236:SF2HOGENOM:HOG000238251
InParanoid:Q08298InterPro:IPR004873KEGG:ath:AT5G25610MINT:MINT-8066540
ncoils:CoilOMA:CEAPPAQPaxDb:Q08298Pfam:PF03181
Pfam:Q08298Pfscan:PS51277PhylomeDB:Q08298PIR:S34823
PRIDE:Q08298PRO:PR:Q08298PROSITE:PS51277Proteomes:UP000006548
RefSeq:NP_197943.1SMART:SM01045STRING:3702.AT5G25610.1SwissPalm:Q08298
TAIR:AT5G25610tair10-symbols:ATRD22tair10-symbols:RD22UniGene:At.23701
UniProt:Q08298
Coordinates (TAIR10) chr5:-:8914498..8916684
Molecular Weight (calculated) 42261.90 Da
IEP (calculated) 9.91
GRAVY (calculated) -0.30
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIRLPLICL LGSFMVVAIA ADLTPERYWS TALPNTPIPN SLHNLLTFDF TDEKSTNVQV GKGGVNVNTH KGKTGSGTAV NVGKGGVRVD TGKGKPGGGT
101: HVSVGSGKGH GGGVAVHTGK PGKRTDVGVG KGGVTVHTRH KGRPIYVGVK PGANPFVYNY AAKETQLHDD PNAALFFLEK DLVRGKEMNV RFNAEDGYGG
201: KTAFLPRGEA ETVPFGSEKF SETLKRFSVE AGSEEAEMMK KTIEECEARK VSGEEKYCAT SLESMVDFSV SKLGKYHVRA VSTEVAKKNA PMQKYKIAAA
301: GVKKLSDDKS VVCHKQKYPF AVFYCHKAMM TTVYAVPLEG ENGMRAKAVA VCHKNTSAWN PNHLAFKVLK VKPGTVPVCH FLPETHVVWF SY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)