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AT5G25590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF630 and DUF632)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52320.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIJ5eggNOG:ENOG410Y91TEMBL:AY091053EMBL:AY133786EMBL:CP002688EnsemblPlants:AT5G25590EnsemblPlants:AT5G25590.1
entrez:832634GeneID:832634Gramene:AT5G25590.1hmmpanther:PTHR21450hmmpanther:PTHR21450:SF22HOGENOM:HOG000242205InterPro:IPR006867
InterPro:IPR006868KEGG:ath:AT5G25590ncoils:CoilOMA:KCEETRRPfam:PF04782Pfam:PF04783PhylomeDB:Q8RWW9
Proteomes:UP000006548RefSeq:NP_197941.1TAIR:AT5G25590UniGene:At.43564UniProt:Q8RWW9
Coordinates (TAIR10) chr5:-:8906684..8909847
Molecular Weight (calculated) 88370.20 Da
IEP (calculated) 5.15
GRAVY (calculated) -0.94
Length 775 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)