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AT5G25560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CHY-type/CTCHY-type/RING-type Zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XXHFeggNOG:KOG1940EMBL:CP002688EnsemblPlants:AT5G25560EnsemblPlants:AT5G25560.1entrez:832631ExpressionAtlas:F4JY60
Gene3D:2.20.28.10Gene3D:3.30.40.10GeneID:832631GO:GO:0008270Gramene:AT5G25560.1hmmpanther:PTHR21319hmmpanther:PTHR21319:SF15
InterPro:IPR001841InterPro:IPR004039InterPro:IPR008913InterPro:IPR013083InterPro:IPR017921PaxDb:F4JY60Pfam:PF05495
Pfam:PF13639Pfam:PF14599Pfscan:PS50089Pfscan:PS51266Pfscan:PS51270PhylomeDB:F4JY60PRIDE:F4JY60
PROSITE:PS50089PROSITE:PS51266PROSITE:PS51270ProteinModelPortal:F4JY60Proteomes:UP000006548Reactome:R-ATH-110320RefSeq:NP_197938.2
SMART:SM00184SMR:F4JY60STRING:3702.AT5G25560.2SUPFAM:0053828SUPFAM:0053829SUPFAM:SSF57850TAIR:AT5G25560
UniGene:At.30900UniProt:F4JY60
Coordinates (TAIR10) chr5:+:8899486..8901391
Molecular Weight (calculated) 35512.50 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.55
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDVYFNHFA QQLQMSDQEK GEMSRHSHPH SINEESESST LERVAAESLT NKVLDRGLME YGCPHYRRRC CIRAPCCNEI FGCHHCHYEA KNNINVDQKQ
101: RHDIPRHQVE QVICLLCGTE QEVGQICIHC GVCMGKYFCK VCKLYDDDTS KKQYHCDGCG ICRIGGRENF FHCYKCGCCY SILLKNGHPC VEGAMHHDCP
201: ICFEFLFESR NDVTVLPCGH TIHQKCLEEM RDHYQYACPL CSKSVCDMSK VWEKFDMEIA ATPMPEPYQN RMVQILCNDC GKKAEVQYHV VAQKCPNCKS
301: YNTRQTRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)