AT5G25480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA methyltransferase-2 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a DNA methyltransferase homolog. Human Dnmt2 methylates tRNA-Asp and can methylate Arabidopsis tRNA-Asp in vitro. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNA methyltransferase-2 (DNMT2); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8870069..8872199 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43721.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||
| Length | 383 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEQELQRIN EKKPWQVLEF YSGIGGMRYS LMASGIVSEV VEAFEINDSA NDVYQHNFKH RPYQGNIQSL TAADLDKYNA DAWLLSPPCQ PYTRQGLQKH 101: SGDARAFSFL RILELIPHTT KPPQMLFVEN VVGFETSDTH MEMIGTLTKL DYVTQEFILS PLQFGVPYSR PRYFCLAKRK PLPFKSQHSN NKLLWSPDPL 201: YGRDDQVEFG KCQAEEGLDK LLEFCKPVEK FLELAAHVDG EPSSVDDSEN GSKDCCGQEG DSVPDSVHQY LVPVSLIERW GNAMDIVYPD SKRCCCFTKS 301: YYRYVKGTGS LLATVQPKIK GKESCLKEQR LRYFTPREVA NFHSFPEDFE FPKHISLRQR YAMLGNSLSV AVVAPLLRYL FDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)