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AT5G25475.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.807
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At5g25475-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G25470.2); Has 122 Blast hits to 121 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:17897EMBL:AC006601EMBL:AK117142EMBL:AK175928EMBL:AK176451EMBL:AY087156EMBL:BT005232
EMBL:CP002688EnsemblPlants:AT5G25475EnsemblPlants:AT5G25475.1EnsemblPlants:AT5G25475.2EnsemblPlants:AT5G25475.3entrez:832622ExpressionAtlas:Q680D9
Gene3D:2.40.330.10GeneID:832622Genevisible:Q680D9GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
HOGENOM:HOG000155371InParanoid:Q680D9IntAct:Q680D9InterPro:IPR003340InterPro:IPR015300iPTMnet:Q680D9KEGG:ath:AT5G25475
Pfam:PF02362Pfam:Q680D9Pfscan:PS50863PhylomeDB:Q680D9PRIDE:Q680D9PRO:PR:Q680D9PROSITE:PS50863
ProteinModelPortal:Q680D9Proteomes:UP000006548RefSeq:NP_001078620.1RefSeq:NP_568473.1RefSeq:NP_851075.1SMART:SM01019SUPFAM:SSF101936
TAIR:AT5G25475UniGene:At.30907UniProt:Q680D9
Coordinates (TAIR10) chr5:-:8867920..8869492
Molecular Weight (calculated) 32293.30 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.66
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MLPKNAIEKI QANVSKPCFW KSLSPGQTWK SKSMRIIPED FVRRTRGAFE HRVVFSVRWE NSWQLWLERE KNELFMIEED WNEFVDDNHL GPNDNLFIKH
101: DETMNLEVQI FKNNGVEIID VPLGVEPETE PFHPTPKKPH KETTPASSFA SGSGCSANGG TNGRGKQRSS DVKNPERYLL NPENPYFVQA VTKRNDVLYV
201: SRPVVQSYRL KFGPVKSTIT YLLPGEKKEE GENRIYNGKP CFSGWSVLCR RHNLNIGDSV VCELERSGGV VTAVRVHFVK KD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)