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AT5G25350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.728
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : EIN3-binding F box protein 2
Curator
Summary (TAIR10)
Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.
Computational
Description (TAIR10)
EIN3-binding F box protein 2 (EBF2); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 1 (TAIR:AT2G25490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17882eggNOG:ENOG410IT20eggNOG:ENOG410XPA4EMBL:AC006258EMBL:AJ609239EMBL:AK227858EMBL:AY485830
EMBL:CP002688EnsemblPlants:AT5G25350EnsemblPlants:AT5G25350.1entrez:832607Gene3D:3.80.10.10GeneID:832607Genevisible:Q708Y0
GO:GO:0005634GO:GO:0006511GO:GO:0009723GO:GO:0009873GO:GO:0010105GO:GO:0016567GO:GO:0019005
Gramene:AT5G25350.1hmmpanther:PTHR24006hmmpanther:PTHR24006:SF501HOGENOM:HOG000238885InParanoid:Q708Y0IntAct:Q708Y0InterPro:IPR001611
InterPro:IPR001810InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT5G25350KO:K14515OMA:PRIGDQGPaxDb:Q708Y0
Pfam:PF00646Pfam:PF13516Pfam:Q708Y0PhylomeDB:Q708Y0PRIDE:Q708Y0PRO:PR:Q708Y0ProteinModelPortal:Q708Y0
Proteomes:UP000006548RefSeq:NP_197917.1SMART:SM00256SMART:SM00367SMR:Q708Y0STRING:3702.AT5G25350.1SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT5G25350tair10-symbols:EBF2UniGene:At.19865UniGene:At.72267UniPathway:UPA00143UniProt:Q708Y0
Coordinates (TAIR10) chr5:-:8794842..8796882
Molecular Weight (calculated) 66065.00 Da
IEP (calculated) 7.81
GRAVY (calculated) 0.15
Length 623 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGIFRFSGD EDCLLGGSMY LSPGSCPGVY YPARKRLRVA ATSFYSGFEE KQTSIDVLPE ECLFEILRRL PSGQERSACA CVSKHWLNLL SSISRSEVNE
101: SSVQDVEEGE GFLSRSLEGK KATDLRLAAI AVGTSSRGGL GKLQIRGSGF ESKVTDVGLG AVAHGCPSLR IVSLWNLPAV SDLGLSEIAR SCPMIEKLDL
201: SRCPGITDSG LVAIAENCVN LSDLTIDSCS GVGNEGLRAI ARRCVNLRSI SIRSCPRIGD QGVAFLLAQA GSYLTKVKLQ MLNVSGLSLA VIGHYGAAVT
301: DLVLHGLQGV NEKGFWVMGN AKGLKKLKSL SVMSCRGMTD VGLEAVGNGC PDLKHVSLNK CLLVSGKGLV ALAKSALSLE SLKLEECHRI NQFGLMGFLM
401: NCGSKLKAFS LANCLGISDF NSESSLPSPS CSSLRSLSIR CCPGFGDASL AFLGKFCHQL QDVELCGLNG VTDAGVRELL QSNNVGLVKV NLSECINVSD
501: NTVSAISVCH GRTLESLNLD GCKNITNASL VAVAKNCYSV NDLDISNTLV SDHGIKALAS SPNHLNLQVL SIGGCSSITD KSKACIQKLG RTLLGLNIQR
601: CGRISSSTVD TLLENLWRCD ILY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)