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AT5G25340.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-like superfamily protein; BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G32270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:832606eggNOG:ENOG410IZ9VeggNOG:ENOG410YVUNEMBL:AK118230
EMBL:BT005530EMBL:CP002688EnsemblPlants:AT5G25340EnsemblPlants:AT5G25340.1
entrez:832606GeneID:832606Gramene:AT5G25340.1hmmpanther:PTHR14942
hmmpanther:PTHR14942:SF2HOGENOM:HOG000015150InterPro:IPR029071KEGG:ath:AT5G25340
OMA:SKISWSHPhylomeDB:Q8GXI1Proteomes:UP000006548RefSeq:NP_197916.1
SMR:Q8GXI1SUPFAM:SSF54236TAIR:AT5G25340UniGene:At.19865
UniGene:At.72267UniProt:Q8GXI1
Coordinates (TAIR10) chr5:+:8793238..8794211
Molecular Weight (calculated) 23454.50 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.55
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSFHRRTFS YDKLPNEPIR LSVLKLDGSS FDVYVLTSAT VGDLKVAIET AFSHVPKKGP SKISWSHVWG HFCLCFGGQK LITDTDCIGN YGMKDGDEVR
101: FKNHVSGNAV LSKGYSRKSK QKNLERVLPK DGDEVLNRIE EIDDSWDDLE RGGLVMYKDD DMETSSNESN RSCLSTVHGC CFAFGLKELL GFGNDRAYYS
201: LRDTWRDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)