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AT5G25220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : KNOTTED1-like homeobox gene 3
Curator
Summary (TAIR10)
A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia
Computational
Description (TAIR10)
KNOTTED1-like homeobox gene 3 (KNAT3); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to light stimulus, detection of cytokinin stimulus, cellular response to cytokine stimulus; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 4 (TAIR:AT5G11060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17868eggNOG:ENOG410XPMQeggNOG:KOG0773EMBL:AC006259EMBL:AY086091EMBL:AY120762EMBL:BT000139
EMBL:CP002688EMBL:X92392EnsemblPlants:AT5G25220EnsemblPlants:AT5G25220.1entrez:832593ExpressionAtlas:P48000Gene3D:1.10.10.60
GeneID:832593Genevisible:P48000GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0005829GO:GO:0009416
GO:GO:0009722GO:GO:0071345hmmpanther:PTHR11850hmmpanther:PTHR11850:SF122HOGENOM:HOG000272741InParanoid:P48000IntAct:P48000
InterPro:IPR001356InterPro:IPR005539InterPro:IPR005540InterPro:IPR005541InterPro:IPR008422InterPro:IPR009057iPTMnet:P48000
OMA:SWQNARHPaxDb:P48000Pfam:P48000Pfam:PF03789Pfam:PF03790Pfam:PF03791Pfam:PF05920
Pfscan:PS50071Pfscan:PS51213PhylomeDB:P48000PRIDE:P48000PRO:PR:P48000PROSITE:PS00027PROSITE:PS50071
PROSITE:PS51213ProteinModelPortal:P48000Proteomes:UP000006548RefSeq:NP_197904.1SMART:SM00389SMART:SM01188SMART:SM01255
SMART:SM01256SMR:P48000STRING:3702.AT5G25220.1SUPFAM:SSF46689TAIR:AT5G25220tair10-symbols:KNAT3UniGene:At.5376
UniProt:P48000
Coordinates (TAIR10) chr5:+:8736208..8738115
Molecular Weight (calculated) 47602.40 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.70
Length 431 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)