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AT5G25160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger protein 3
Curator
Summary (TAIR10)
Encodes a zinc finger protein containing only a single zinc finger.
Computational
Description (TAIR10)
zinc finger protein 3 (ZFP3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G10970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZWWeggNOG:ENOG410YPEBEMBL:AK227706EnsemblPlants:AT5G25160EnsemblPlants:AT5G25160.1entrez:832587ExpressionAtlas:Q0WT56
GeneID:832587GO:GO:0006355GO:GO:0046872Gramene:AT5G25160.1InterPro:IPR007087KEGG:ath:AT5G25160OMA:HHEEQQK
PaxDb:Q0WT56Pfam:Q39262Pfscan:PS50157PhylomeDB:Q0WT56PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q0WT56
ProteinModelPortal:Q39262RefSeq:NP_197898.1scanprosite:PS00028SMR:Q0WT56STRING:3702.AT5G25160.1SUPFAM:SSF57667TAIR:AT5G25160
tair10-symbols:ZFP3UniGene:At.1642UniProt:Q0WT56UniProt:Q39262
Coordinates (TAIR10) chr5:+:8687524..8688231
Molecular Weight (calculated) 26352.40 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.77
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MDASIVSSST AFPYQDSLNQ SIEDEERDVH NSSHELNLID CIDDTTSIVN ESTTSTEQKL FSCNYCQRTF YSSQALGGHQ NAHKRERTLA KRGQRMAASA
101: SAFGHPYGFS PLPFHGQYNN HRSLGIQAHS ISHKLSSYNG FGGHYGQINW SRLPFDQQPA IGKFPSMDNF HHHHHQMMMM APSVNSRSNN IDSPSNTGRV
201: LEGSPTLEQW HGDKGLLLST SHHEEQQKLD LSLKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)