suba logo
AT5G25100.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Endomembrane protein 70 protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Endomembrane protein 70 protein family; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G10840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17856eggNOG:ENOG410XPIWeggNOG:KOG1278EMBL:AC005964
EMBL:AF360135EMBL:CP002688EnsemblPlants:AT5G25100EnsemblPlants:AT5G25100.1
entrez:832581ExpressionAtlas:Q9C5N2GeneID:832581Genevisible:Q9C5N2
GO:GO:0000139GO:GO:0010008GO:GO:0016021hmmpanther:PTHR10766
hmmpanther:PTHR10766:SF46HOGENOM:HOG000216679InParanoid:Q9C5N2InterPro:IPR004240
InterPro:IPR020846iPTMnet:Q9C5N2PANTHER:PTHR10766PaxDb:Q9C5N2
Pfam:PF02990Pfam:Q9C5N2PhylomeDB:Q9C5N2PRIDE:Q9C5N2
PRO:PR:Q9C5N2ProteinModelPortal:Q9C5N2Proteomes:UP000006548RefSeq:NP_568465.1
STRING:3702.AT5G25100.2SUPFAM:SSF103473SwissPalm:Q9C5N2TAIR:AT5G25100
TMHMM:TMhelixUniGene:At.19004UniGene:At.74873UniProt:Q9C5N2
Coordinates (TAIR10) chr5:-:8648374..8651015
Molecular Weight (calculated) 74123.90 Da
IEP (calculated) 8.51
GRAVY (calculated) 0.26
Length 644 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFYRSSRRL QILGSVILLL SIHVAHSFYL PGVAPQDFEK GDELKVKVNK LTSIKTQLPY SYYSLPFCRP KKIVDSTENL GEVLRGDRIE NAPYSFKMRE
101: AQMCNVLGRV MLDAKSAKAF KEKIDDEYRV NMILDNLPLV VPIERIDPGQ GSPSVVYQLG YHVGLKGQYE GSKEQKYFMH NHLAFTVRYH RDMQTDAARI
201: VGFEVKPYSV KHEYEGQWSE KTRLTTCDPH TKRLVVSSAT PQEVENKKEI IFTYDVDFQE SEVKWASRWD AYLLMSDNQI HWFSIVNSLM IVLFLSGMVA
301: MIMLRTLYRD ISRYNELETQ EEAQEETGWK LVHGDVFRPP ANSDLLCVYV GTGVQCLGMV LVTMIFAMLG FLSPSNRGGL MTAMLLLWVF MGLFAGYASS
401: RLYKMFKGTE WKRIAFRTAF LFPAVVSAIF FVLNALIWGQ KSSGAVPFGT MFALIFLWFG ISVPLVFVGA YLGFKKPPLD DPVKTNKIPR QIPEQAWYMN
501: PIFSILIGGI LPFGAVFIEL FFILTSIWLN QFYYIFGFLF LVFVILMVTC AEITIVLCYF QLCSEDYLWW WRSYLTSGSS AVYLFLYAAF YFFTKLQITK
601: LVSAMLYFGY MLIASYAFFV LTGTIGFYAC LWFTRLIYSS VKID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)