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AT5G24880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G10660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JURAeggNOG:ENOG41106MNEMBL:CP002688EMBL:DQ446981EnsemblPlants:AT5G24880EnsemblPlants:AT5G24880.1entrez:832557
GeneID:832557Gramene:AT5G24880.1hmmpanther:PTHR33349hmmpanther:PTHR33349:SF2KEGG:ath:AT5G24880ncoils:CoilOMA:NIQERDQ
PhylomeDB:Q3E966Proteomes:UP000006548RefSeq:NP_197870.1TAIR:AT5G24880UniGene:At.54983UniProt:Q3E966
Coordinates (TAIR10) chr5:+:8552743..8554074
Molecular Weight (calculated) 49286.60 Da
IEP (calculated) 4.91
GRAVY (calculated) -1.38
Length 443 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTSSTTKA KPDNQNLSRT KSLGRKPKQP LSTASSEDGS SDQKPEKPLP NYLKPTISSR PDAGKLLKKN NNSLDDNQKL LRRRSFDRPP SSLTSPSTSA
101: SPRIQKSLNV SPSRSRDRPA VPREKPVTAL RSSSFHGSRN VPKGGNTAKS PPVAPKKSGL NSSSTSSKSK KEGSENVRIK KASDKEIALD SASMSSAQED
201: HQEEILKVES DHLQVSDHDI EEPKYEKEEK EVQEKVVQAN ESVEEKAESS GPTPVASPVG KDCNAVVAEL EEKLIKNEDD IEEKTEEMKE QDNNQANKSE
301: EEEDVKKKID ENETPEKVDT ESKEVESVEE TTQEKEEEVK EEGKERVEEE EKEKEKVKED DQKEKVEEEE KEKVKGDEEK EKVKEEESAE GKKKEVVKGK
401: KESPSAYNDV IASKMQENPR KNKVLALAGA FQTVIDYETA ASK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)