AT5G24870.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G10650.2); Has 13925 Blast hits to 9892 proteins in 386 species: Archae - 2; Bacteria - 791; Metazoa - 3360; Fungi - 995; Plants - 4460; Viruses - 70; Other Eukaryotes - 4247 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:8545008..8546923 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56795.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.76 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||
| Length | 520 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR 101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS 201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP 301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS 401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR 501: MKNWCPICKT SAESQPHPFS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)