suba logo
AT5G24830.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G63080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AF069716EMBL:AK117329EMBL:AL392145EMBL:AY140089EMBL:BT008362
EMBL:CP002688EnsemblPlants:AT5G24830EnsemblPlants:AT5G24830.1entrez:832552GeneID:832552Genevisible:Q8L6Y3Gramene:AT5G24830.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF586HOGENOM:HOG000115644InParanoid:Q8L6Y3InterPro:IPR002885iPTMnet:Q8L6Y3KEGG:ath:AT5G24830
OMA:IIQGLCIPaxDb:Q8L6Y3Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q8L6Y3Pfscan:PS51375
PhylomeDB:Q8L6Y3PRO:PR:Q8L6Y3PROSITE:PS51375ProteinModelPortal:Q8L6Y3Proteomes:UP000006548RefSeq:NP_568460.1SMR:Q8L6Y3
STRING:3702.AT5G24830.1TAIR:AT5G24830TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.45620UniGene:At.69724UniProt:Q8L6Y3
Coordinates (TAIR10) chr5:+:8531226..8533266
Molecular Weight (calculated) 66540.00 Da
IEP (calculated) 8.06
GRAVY (calculated) -0.05
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLISCGEV TSSQFTVFRL LNQSLDFVSD NVSRLLAPIF TNLRDFEMRL SCIERPPSIS GNHSHLCTEK WFSDQKDYDQ KEDPEAIFNV LDYILKSSLD
101: RLASLRESVC QTKSFDYDDC LSIHSSIMRD LCLQGKLDAA LWLRKKMIYS GVIPGLITHN HLLNGLCKAG YIEKADGLVR EMREMGPSPN CVSYNTLIKG
201: LCSVNNVDKA LYLFNTMNKY GIRPNRVTCN IIVHALCQKG VIGNNNKKLL EEILDSSQAN APLDIVICTI LMDSCFKNGN VVQALEVWKE MSQKNVPADS
301: VVYNVIIRGL CSSGNMVAAY GFMCDMVKRG VNPDVFTYNT LISALCKEGK FDEACDLHGT MQNGGVAPDQ ISYKVIIQGL CIHGDVNRAN EFLLSMLKSS
401: LLPEVLLWNV VIDGYGRYGD TSSALSVLNL MLSYGVKPNV YTNNALIHGY VKGGRLIDAW WVKNEMRSTK IHPDTTTYNL LLGAACTLGH LRLAFQLYDE
501: MLRRGCQPDI ITYTELVRGL CWKGRLKKAE SLLSRIQATG ITIDHVPFLI LAKKYTRLQR PGEAYLVYKK WLATRNRGVS CPSILNHMHT EEQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)