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AT5G24810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.500
plasma membrane 0.500
ASURE: golgi,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC1 family protein; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Beta-lactamase-type transpeptidase fold (InterPro:IPR012338), Beta-lactamase-related (InterPro:IPR001466), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0661eggNOG:COG1680eggNOG:KOG1235EMBL:AY059911EMBL:BT010176EMBL:CP002688EnsemblPlants:AT5G24810
EnsemblPlants:AT5G24810.1entrez:832550ExpressionAtlas:Q93YN5Gene3D:3.40.710.10GeneID:832550Gramene:AT5G24810.1hmmpanther:PTHR10566
hmmpanther:PTHR10566:SF84HOGENOM:HOG000030235InterPro:IPR001466InterPro:IPR004147InterPro:IPR009330InterPro:IPR011009InterPro:IPR012338
KEGG:00520+2.7.1.-KEGG:00540+2.7.1.-KEGG:00680+2.7.1.-KEGG:00900+2.7.1.-MEROPS:S12.A01Pfam:PF00144Pfam:PF03109
Pfam:PF06176PhylomeDB:Q93YN5Proteomes:UP000006548RefSeq:NP_568458.1SMR:Q93YN5STRING:3702.AT5G24810.2SUPFAM:SSF56112
SUPFAM:SSF56601TAIR:AT5G24810UniGene:At.25540UniGene:At.49059unipathway:UPA00958UniProt:Q93YN5
Coordinates (TAIR10) chr5:-:8516902..8522616
Molecular Weight (calculated) 112216.00 Da
IEP (calculated) 7.84
GRAVY (calculated) -0.22
Length 1009 amino acids
Sequence (TAIR10)
(BLAST)
0001: MRNSRFRGIN SGSFQNKRWW SLVLDSLLSF FVRLSEIIKR FFHKFVSMGL GNIYRRRMKV FSIAILIYLD YKGVQQKEKW IKKSKVPALW DKAHDRNAKR
0101: VLNLIVELEG LWVKLGQYLS TRADVLPQAY ISLLTQLQDS LPPRPLQEVC RTIERELGNS MDVLFTDFVD EPLATASIAQ VHRATLANGQ DVVVKVQHDG
0201: IRAIILEDLK NAKSIVDWIA WAEPQYNFNP MIDEWCKEAP RELDFNIEAE NTRTVSGNLG CKKTNDEVRS ANRVDVLIPD IIQSSESVLI LEYMDGVRLN
0301: DVESLDAFGV DKQKIVEEIT RAYAHQIFVD GFFNGDPHPG NFLVSKEPQH RPILLDFGLS KKISHSLKQA LAKMFLASAE GDQVALLSAF AEMGLKLRLD
0401: MPDQAMSVAG LFFRSSTPSS EAMKTFKTLN DQRVQNMKVI QEKMQLNQKE VKRFNPIDAF PGDIVIFARV INLLRGLSST MNVRIVYLDI MRPFAESVLL
0501: GSISRGPTVD AHWIHDSPIH SDVESKVRKL LAELGSIQKI LGIQVCAYKD GKVIIDTAAG VLGRYDPRPV QPDSLFPVFS VTKGVTAGMI HWLVDKRKLQ
0601: LDQTVANMWP GFGSNGKDTI KVHHVLNHTS GMQNSFDPVG ENPLLICDWD ECLKRIANSS PETEPGSQQS YHYLTFGWLC GGILEYASGK KLQEILEESI
0701: VKPLNIDGEL YIGIPPGVES RLATLTFDTD EMSKLSSIAS QPELPSTFQP DKIIQMATNL PVLFNTLNVR RAIIPAANGH CSARALARYY ATLADGGLVP
0801: PPHSSLSQPP LGSHTHVPKF TSLKDTTKKK KGKEMAATEK GKSKDHQERK LYDEKQFMSA SSSRESNTES LARLVDTNSS AGKTEINSDD HQHDIHNMFS
0901: NPRIHDAFMG AGDYSGLVVP DGKFGLGFKR AISQDGSLVG FGHSGLGGST GFCDINNRFS IAVTLNKMSM GGVTANIVKL VCSELNIPLP KDFATDIGAD
1001: SQMGTPLIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)