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AT5G24760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GroES-like zinc-binding dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GroES-like zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase 1 (TAIR:AT1G77120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G24760-MONOMERBioCyc:ARA:GQT-2677-MONOMERBioCyc:ARA:GQT-2678-MONOMEREC:1.1.1.1eggNOG:COG1062eggNOG:KOG0022EMBL:AL392145
EMBL:AY079163EMBL:AY085523EMBL:AY094000EMBL:CP002688EnsemblPlants:AT5G24760EnsemblPlants:AT5G24760.1entrez:832545
Gene3D:3.40.50.720Gene3D:3.90.180.10GeneID:832545Genevisible:Q8LEB2GO:GO:0004022GO:GO:0005737GO:GO:0008270
gramene_pathway:1.1.1.1gramene_pathway:1.1.1.22gramene_pathway:ETOH-ACETYLCOA-ANA-PWYgramene_pathway:PWY-3801gramene_pathway:PWY-3821gramene_pathway:PWY-4821gramene_pathway:PWY-5486
gramene_pathway:PWY-6333gramene_pathway:PWY66-21hmmpanther:PTHR11695hmmpanther:PTHR11695:SF449HOGENOM:HOG000294674InParanoid:Q8LEB2InterPro:IPR002085
InterPro:IPR002328InterPro:IPR011032InterPro:IPR013149InterPro:IPR013154InterPro:IPR016040InterPro:IPR020843KEGG:ath:AT5G24760
KO:K00001OMA:MNKEIMIPANTHER:PTHR11695PaxDb:Q8LEB2Pfam:PF00107Pfam:PF08240Pfam:Q8LEB2
PhylomeDB:Q8LEB2PRIDE:Q8LEB2PRO:PR:Q8LEB2PROSITE:PS00059ProteinModelPortal:Q8LEB2Proteomes:UP000006548RefSeq:NP_001078619.1
RefSeq:NP_568453.1RefSeq:NP_974831.1scanprosite:PS00059SMART:SM00829SMR:Q8LEB2STRING:3702.AT5G24760.1SUPFAM:SSF50129
SUPFAM:SSF51735TAIR:AT5G24760UniGene:At.43162UniGene:At.65844UniProt:Q8LEB2
Coordinates (TAIR10) chr5:-:8495035..8497245
Molecular Weight (calculated) 40726.30 Da
IEP (calculated) 6.99
GRAVY (calculated) 0.09
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MSASSSSFEQ PQVITCNAAV AWRAGEPLVM EEVEVSPPQP LEIRIKVVCT SLCRSDLSAW ESQSLLPRIF GHEAAGIVES IGEGVTEFEK GDHVLAVFTG
101: ECGSCRHCIS GKSNMCQVLG MERKGLMHSD QKTRFSIKGK PVYHYCAVSS FSEYTVVHSG CAVKVDPLAP LHKICLLSCG VAAGLGAAWN VADVQKGSSV
201: VIFGLGTVGL SVAQGAKLRG AAQILGVDIN PAKAEQAKTF GVTDFINSND LSEPIPQVIK RMTGGGADFS FECVGDTGIA TTALQSCSDG WGMTVTLGVP
301: KAKPEVSAHY GLFLSGKSLK GTLFGGWKPK SDLPSLIDKY MNKEIMIDEF ITHNLSFDEI NKAFVLMREG KCLRCVLHMP K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)