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AT5G24740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.692
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1162)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
INVOLVED IN: protein localization; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1); Has 2219 Blast hits to 1322 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 1077; Fungi - 361; Plants - 231; Viruses - 0; Other Eukaryotes - 548 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5043eggNOG:KOG1809EMBL:CP002688EnsemblPlants:AT5G24740EnsemblPlants:AT5G24740.1entrez:832543ExpressionAtlas:F4KIH9
GeneID:832543Gramene:AT5G24740.1hmmpanther:PTHR16166hmmpanther:PTHR16166:SF100InParanoid:F4KIH9InterPro:IPR009543InterPro:IPR026847
InterPro:IPR026854InterPro:IPR031642InterPro:IPR031645InterPro:IPR031646OMA:EYINIRIPANTHER:PTHR16166PaxDb:F4KIH9
Pfam:PF06650Pfam:PF12624Pfam:PF16908Pfam:PF16909Pfam:PF16910PRIDE:F4KIH9ProteinModelPortal:F4KIH9
Proteomes:UP000006548RefSeq:NP_568451.7STRING:3702.AT5G24740.1TAIR:AT5G24740UniGene:At.30944UniProt:F4KIH9
Coordinates (TAIR10) chr5:-:8470073..8489703
Molecular Weight (calculated) 386479.00 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.12
Length 3464 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLEGYVQGFV NLLLGYLGRY IKDIQKDQLK ISLWNGEVLL ENVELNPEAF EYLQLPIALK QGRVGKLSIK IPWKKLHRDP VTIMIEDVFI CASQRNDQEW
0101: SSDVVEKREF AGKKAKLASA ELAKLSRRVF DNPGGNSYMS YITAKILDSV QVSIKNFHIL YSDAQPESGQ VVLGLRFSSL TVTKQNSVGP SVGRVRGGQV
0201: NILVEVEGLE IYCDMYEGNM DFPSVNEKIG FDNWCQSRLQ SNRFGYLLKP VHVSVTLLVN RSGELYDDLP QYSISAELTD VVVTLNEFQL QQILILLDYL
0301: QTSQLRERYG RYRPCSTSLS RKPPGWQKLW WHYAQNSVLS DSIDKSIRLG LEELEKKSDI DDILSYRSAA EGEMQEACSE LTVNMGATGA TRSEKEQSAP
0401: EKEPSDDPTL NKSRGWLNWL SRGMLGAGGT EDSSQFSGVV SDEVVKDIHK ATKFYPLSSS PRNTSATGKI CTCSIRLNVR KFSATLQHIS GSSSQVITEL
0501: DILGVIVECK SWKDSTAMIL SVISGRLVYP HNGKEILTMK RVCSQSDTLE TKPSYGARLE LSKDHDVALS LKATLQPLEA AYDGGFILAV SNFFSGSRYF
0601: KLQHERILSS LNGLESETRL AAKAEYLLSS RNKVKWDLDI KDLTLSFPGR LVESESYNLV LVLESLSITS SSTDALSQIP RLQSDVDHVV NSLQSSVEAL
0701: DAFQVKDLYD HFDIKICNLE MKLMKIHPFQ ELPLVEKSSL LIKFASCIIP EESILKQLEV EATLPMFNVH FSPSIFKGVM SVIEYLDIQD HGTRNPPPSP
0801: APIFHFTIKT DLAFLRLHVN LENKGENSTV LVLSIQQLDL WYSRAIFEEW SVRAKTLEIT ACSSKDAADS HILCSSGNLL KSSSHGHGMD AHTSDETNII
0901: DYRTTPEAAI SLNCKVSQSK SFIFHKYTVY WRSAELHCYP YIFGLLTNFL DKIASYKISS SYTNPSSLAT DTIAPTEIPQ FDFERFGFSN FTESRSCGCI
1001: PLDKFPFVTI NNSGSLHSLE SSLCYSTSDW RKLFILKNRK DGAQIGLNCE CNSCTFQLKR DCPLNGLASS RDLGQTNHFT VDMHVFNTNV HFHDSSSVFG
1101: TIILPVSRYF LNISDDLLDL VASAEDLMLV SSLFTNYSGG FLWKQSSTDV SQVLNLRVRK RGLEPSGSQL EVSIGIQHTY CILPPEYLAI IIGYFSLSDW
1201: TSKSGLQSLP QATELTKAHS EFAISYKIEI LDSSIVLPVE GDDRRQLKVD IQQLYISFIP ECALSNVVQH IPQECVIPLN QVLGRADCLN IFGRDLSVSL
1301: LLSESDISTF KKNAVCRSIT LAASIIADTW IRFPCDHNPL TELACVMSRV DVCEIVVDDS DALDGFKAFL DVVDQLSLVD EESKLFVSDV PQFLHTKMRL
1401: KQELSVAPLE PSTSFIKFRI FVNLLTSKLH RLRKAPGTLL SEPVLQADMK FVCSGELKNN FPMSLDVQFF KIGLYSLLSS VMLARCINAD GDPSALRVRF
1501: TEQAENEYDL CFSLPSLDIW LHFFDWIEVI ELLKSYSQKL EDSSEDRFFS KGSKLDMDES IGVVRTICDN TDRVLNVLQT EVSENSSEVM SFAARSENIG
1601: VKIHIPLCTS HTEFPGFMAT DVHEISEEEH TNCFKGNYCK YVSVTACSRS GELSILGRDV KLSYKIEKLN GILAISGVDT VRSCSLFGAA QLLVETSIQM
1701: DQNKIMSIDV GILSDKVEMH ASHQVLSFWH GITFDAPETP SSQNSEGNMS IKVQIRDVSL LISDGKWGCS GMLLEVLMRN FLLQANLAEK NMESLVSCDL
1801: EVNYNNMHKV LWEPFIEPWN FDIKLSRKFD ANSLLNNAGL TEVIVASSNQ LNLNLTESLF ECIFRIIEML NILELMETDA IPDNKGLSVY CTNSTRTERY
1901: SPYVLQNLTS LPLGYQVFQG HDSDVLNISA PVAQNFVQPG CSVPIYIDNS DTLLIPDRRR SQFGCSSSES GDAIHHYMKV QLDGTSFASP PHSMDRIGLS
2001: YFEVDFSKTS NSSDNVEKAS KSGYGSSFVV PVVYEVSLQQ QSKLIRVYST VIILNSTSMP LELRFDIPFG ISPKLPYLVD LNTIFYYSYA ILFQILDPIF
2101: PGQEFPLPLH LAKSGRLRWR PLGDSYLWSE AHSISKVLSQ DSGIGFRRSF ACYPCHPSHE PFRCCISVQS TSLPASFHIN DLSAGNFGQQ LHNLDQSREQ
2201: FIHQVTLSTP FVVSNCLPDP ISLSIESGGI TQTASLPETP FHHIDPSHDL VLEFKLNGCR TSSLKFSRSE TFSTEAKFSG GKFSQIETIS FDSHVGGGSV
2301: YVSCEKTMDA TCGAREVLIF VPFLLYNCTG TPLIVSDCTN ETKGIYSVIP SCYNLIEQHF VQSRKVGLGI LTSEKDLLDK AVMEDIPCSP SSSECSNTAS
2401: STERFIDKHA TQSTRQVPFA AYPKDSAIVR KRSLSSKSLR EVCFQGNDES GKVKACIYSP CPISRVSDTM IRVKRDLPGW VNSSSPYPLW SAPFPLVPPS
2501: GSTNVVVPQP SPGESSLLSV TCSILGGALA GRTQAITFQP RYIICNSCSH NLCYKQKGTN LVSHLAVGQH SQLQWTDTTR ELLVSIRLNE PGWQWSGSFL
2601: PDHLGDTQLK IWNYVNKAFN MVRVEVQNAN MSSGDEKIVG SVHGHVGTNF ILLSDDDMGY MPYRIDNFSN ERLRVYQQKC ETFDTIVHPY TSCPYAWDEP
2701: CYPHRLTIEV PGDRVLGSYA FEITKQPIAV HLRSTSEKPE RTLLLSICAE GATKVFSVVD SGYHAIKDIK ETFDSRFHEK GKKKLQTDNI IRYTETFLLV
2801: LPSIGISLVN SHPQELVYAC ASNVVLELSQ SVDQQKLSFQ ISSLQIDNPL QNSSYPVILS FNHDHEVIPP DWGMKNNKAI LLSEIVQQVR GNSCDAVVYV
2901: DLAKWRKKDV SLVSFEYINI RIGEFGLELE LQTLLSLLEF VKAVLPNSQA RLLPLSDPTL RPLIYDTGSK DISSEDTPHA RNIPVFNKNQ RSIVALPIVV
3001: PIGAPWQHIH LLARRRRKIY VETFDLAPIQ FTLSFCSAPW MLRNGILTSG ESLIHRGLMA LADVEGARIH LKQLTIAHQI TSWESFQEIL VGHYTRQILH
3101: EIYKVFGSAG VIGNPMGFAR NVAFGIKDFL SAPSRSISKS PAGIIQGMAH GTTSLFSSTI YALSDAATQF SKAAHKGIVA FTFNDHDVAR MEKQQLGEGS
3201: RSKGVIGEVF EGLTGLLQSP IRGAEKHGLP GVISGVAMGI TGLVARPTAS ILEVTGKTAQ SIRNRSRIHN IRSQRHRLRL PRPLSREQPL RPYSWEEAVG
3301: TAVLMEVGDS LKFKGEKLVK CKALKQEGAF VVITGRLVLV LSSLSLVDFR KQGFLGVPID LVWNIEREIG LESVIHTDCS GGVVRIIGSN SDGVWNWRQD
3401: QQKKSSPTKK RWNNPSAQPL LQTNLEFPSE EEAEDLLSVL LSTIETGKSR SWHSRFVLSR SNIT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)