AT5G24740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.945 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1162) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
INVOLVED IN: protein localization; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1); Has 2219 Blast hits to 1322 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 1077; Fungi - 361; Plants - 231; Viruses - 0; Other Eukaryotes - 548 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8470073..8489703 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 386479.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.36 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 3464 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLEGYVQGFV NLLLGYLGRY IKDIQKDQLK ISLWNGEVLL ENVELNPEAF EYLQLPIALK QGRVGKLSIK IPWKKLHRDP VTIMIEDVFI CASQRNDQEW 0101: SSDVVEKREF AGKKAKLASA ELAKLSRRVF DNPGGNSYMS YITAKILDSV QVSIKNFHIL YSDAQPESGQ VVLGLRFSSL TVTKQNSVGP SVGRVRGGQV 0201: NILVEVEGLE IYCDMYEGNM DFPSVNEKIG FDNWCQSRLQ SNRFGYLLKP VHVSVTLLVN RSGELYDDLP QYSISAELTD VVVTLNEFQL QQILILLDYL 0301: QTSQLRERYG RYRPCSTSLS RKPPGWQKLW WHYAQNSVLS DSIDKSIRLG LEELEKKSDI DDILSYRSAA EGEMQEACSE LTVNMGATGA TRSEKEQSAP 0401: EKEPSDDPTL NKSRGWLNWL SRGMLGAGGT EDSSQFSGVV SDEVVKDIHK ATKFYPLSSS PRNTSATGKI CTCSIRLNVR KFSATLQHIS GSSSQVITEL 0501: DILGVIVECK SWKDSTAMIL SVISGRLVYP HNGKEILTMK RVCSQSDTLE TKPSYGARLE LSKDHDVALS LKATLQPLEA AYDGGFILAV SNFFSGSRYF 0601: KLQHERILSS LNGLESETRL AAKAEYLLSS RNKVKWDLDI KDLTLSFPGR LVESESYNLV LVLESLSITS SSTDALSQIP RLQSDVDHVV NSLQSSVEAL 0701: DAFQVKDLYD HFDIKICNLE MKLMKIHPFQ ELPLVEKSSL LIKFASCIIP EESILKQLEV EATLPMFNVH FSPSIFKGVM SVIEYLDIQD HGTRNPPPSP 0801: APIFHFTIKT DLAFLRLHVN LENKGENSTV LVLSIQQLDL WYSRAIFEEW SVRAKTLEIT ACSSKDAADS HILCSSGNLL KSSSHGHGMD AHTSDETNII 0901: DYRTTPEAAI SLNCKVSQSK SFIFHKYTVY WRSAELHCYP YIFGLLTNFL DKIASYKISS SYTNPSSLAT DTIAPTEIPQ FDFERFGFSN FTESRSCGCI 1001: PLDKFPFVTI NNSGSLHSLE SSLCYSTSDW RKLFILKNRK DGAQIGLNCE CNSCTFQLKR DCPLNGLASS RDLGQTNHFT VDMHVFNTNV HFHDSSSVFG 1101: TIILPVSRYF LNISDDLLDL VASAEDLMLV SSLFTNYSGG FLWKQSSTDV SQVLNLRVRK RGLEPSGSQL EVSIGIQHTY CILPPEYLAI IIGYFSLSDW 1201: TSKSGLQSLP QATELTKAHS EFAISYKIEI LDSSIVLPVE GDDRRQLKVD IQQLYISFIP ECALSNVVQH IPQECVIPLN QVLGRADCLN IFGRDLSVSL 1301: LLSESDISTF KKNAVCRSIT LAASIIADTW IRFPCDHNPL TELACVMSRV DVCEIVVDDS DALDGFKAFL DVVDQLSLVD EESKLFVSDV PQFLHTKMRL 1401: KQELSVAPLE PSTSFIKFRI FVNLLTSKLH RLRKAPGTLL SEPVLQADMK FVCSGELKNN FPMSLDVQFF KIGLYSLLSS VMLARCINAD GDPSALRVRF 1501: TEQAENEYDL CFSLPSLDIW LHFFDWIEVI ELLKSYSQKL EDSSEDRFFS KGSKLDMDES IGVVRTICDN TDRVLNVLQT EVSENSSEVM SFAARSENIG 1601: VKIHIPLCTS HTEFPGFMAT DVHEISEEEH TNCFKGNYCK YVSVTACSRS GELSILGRDV KLSYKIEKLN GILAISGVDT VRSCSLFGAA QLLVETSIQM 1701: DQNKIMSIDV GILSDKVEMH ASHQVLSFWH GITFDAPETP SSQNSEGNMS IKVQIRDVSL LISDGKWGCS GMLLEVLMRN FLLQANLAEK NMESLVSCDL 1801: EVNYNNMHKV LWEPFIEPWN FDIKLSRKFD ANSLLNNAGL TEVIVASSNQ LNLNLTESLF ECIFRIIEML NILELMETDA IPDNKGLSVY CTNSTRTERY 1901: SPYVLQNLTS LPLGYQVFQG HDSDVLNISA PVAQNFVQPG CSVPIYIDNS DTLLIPDRRR SQFGCSSSES GDAIHHYMKV QLDGTSFASP PHSMDRIGLS 2001: YFEVDFSKTS NSSDNVEKAS KSGYGSSFVV PVVYEVSLQQ QSKLIRVYST VIILNSTSMP LELRFDIPFG ISPKLPYLVD LNTIFYYSYA ILFQILDPIF 2101: PGQEFPLPLH LAKSGRLRWR PLGDSYLWSE AHSISKVLSQ DSGIGFRRSF ACYPCHPSHE PFRCCISVQS TSLPASFHIN DLSAGNFGQQ LHNLDQSREQ 2201: FIHQVTLSTP FVVSNCLPDP ISLSIESGGI TQTASLPETP FHHIDPSHDL VLEFKLNGCR TSSLKFSRSE TFSTEAKFSG GKFSQIETIS FDSHVGGGSV 2301: YVSCEKTMDA TCGAREVLIF VPFLLYNCTG TPLIVSDCTN ETKGIYSVIP SCYNLIEQHF VQSRKVGLGI LTSEKDLLDK AVMEDIPCSP SSSECSNTAS 2401: STERFIDKHA TQSTRQVPFA AYPKDSAIVR KRSLSSKSLR EVCFQGNDES GKVKACIYSP CPISRVSDTM IRVKRDLPGW VNSSSPYPLW SAPFPLVPPS 2501: GSTNVVVPQP SPGESSLLSV TCSILGGALA GRTQAITFQP RYIICNSCSH NLCYKQKGTN LVSHLAVGQH SQLQWTDTTR ELLVSIRLNE PGWQWSGSFL 2601: PDHLGDTQLK IWNYVNKAFN MVRVEVQNAN MSSGDEKIVG SVHGHVGTNF ILLSDDDMGY MPYRIDNFSN ERLRVYQQKC ETFDTIVHPY TSCPYAWDEP 2701: CYPHRLTIEV PGDRVLGSYA FEITKQPIAV HLRSTSEKPE RTLLLSICAE GATKVFSVVD SGYHAIKDIK ETFDSRFHEK GKKKLQTDNI IRYTETFLLV 2801: LPSIGISLVN SHPQELVYAC ASNVVLELSQ SVDQQKLSFQ ISSLQIDNPL QNSSYPVILS FNHDHEVIPP DWGMKNNKAI LLSEIVQQVR GNSCDAVVYV 2901: DLAKWRKKDV SLVSFEYINI RIGEFGLELE LQTLLSLLEF VKAVLPNSQA RLLPLSDPTL RPLIYDTGSK DISSEDTPHA RNIPVFNKNQ RSIVALPIVV 3001: PIGAPWQHIH LLARRRRKIY VETFDLAPIQ FTLSFCSAPW MLRNGILTSG ESLIHRGLMA LADVEGARIH LKQLTIAHQI TSWESFQEIL VGHYTRQILH 3101: EIYKVFGSAG VIGNPMGFAR NVAFGIKDFL SAPSRSISKS PAGIIQGMAH GTTSLFSSTI YALSDAATQF SKAAHKGIVA FTFNDHDVAR MEKQQLGEGS 3201: RSKGVIGEVF EGLTGLLQSP IRGAEKHGLP GVISGVAMGI TGLVARPTAS ILEVTGKTAQ SIRNRSRIHN IRSQRHRLRL PRPLSREQPL RPYSWEEAVG 3301: TAVLMEVGDS LKFKGEKLVK CKALKQEGAF VVITGRLVLV LSSLSLVDFR KQGFLGVPID LVWNIEREIG LESVIHTDCS GGVVRIIGSN SDGVWNWRQD 3401: QQKKSSPTKK RWNNPSAQPL LQTNLEFPSE EEAEDLLSVL LSTIETGKSR SWHSRFVLSR SNIT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)