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AT5G24520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.969
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes.
Computational
Description (TAIR10)
TRANSPARENT TESTA GLABRA 1 (TTG1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G12910.1); Has 6142 Blast hits to 5599 proteins in 374 species: Archae - 8; Bacteria - 429; Metazoa - 2235; Fungi - 1639; Plants - 1018; Viruses - 0; Other Eukaryotes - 813 (source: NCBI BLink).
Protein Annotations
BioGrid:17798eggNOG:ENOG410XQ78eggNOG:KOG0290EMBL:AB010068EMBL:AJ133743EMBL:AJ251522EMBL:AJ251523
EMBL:AK227211EMBL:BT020231EMBL:BT020513EMBL:CP002688EnsemblPlants:AT5G24520EnsemblPlants:AT5G24520.1EnsemblPlants:AT5G24520.2
EnsemblPlants:AT5G24520.3entrez:832523Gene3D:2.130.10.10GeneID:832523Genevisible:Q9XGN1GO:GO:0003677GO:GO:0005634
GO:GO:0005737GO:GO:0007275GO:GO:0009723GO:GO:0009733GO:GO:0009957GO:GO:0010026GO:GO:0032880
GO:GO:0045165Gramene:AT5G24520.1Gramene:AT5G24520.2Gramene:AT5G24520.3hmmpanther:PTHR19919hmmpanther:PTHR19919:SF2HOGENOM:HOG000260968
InParanoid:Q9XGN1IntAct:Q9XGN1InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR031104
KEGG:ath:AT5G24520KO:K11805OMA:IDWICICPANTHER:PTHR19919:SF2PaxDb:Q9XGN1Pfam:PF00400Pfam:Q9XGN1
Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9XGN1PRIDE:Q9XGN1PRO:PR:Q9XGN1PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294ProteinModelPortal:Q9XGN1Proteomes:UP000006548RefSeq:NP_197840.1RefSeq:NP_851069.1RefSeq:NP_851070.1scanprosite:PS00678
SMART:SM00320SMR:Q9XGN1STRING:3702.AT5G24520.1SUPFAM:SSF50978TAIR:AT5G24520tair10-symbols:ATTTG1tair10-symbols:TTG
tair10-symbols:TTG1tair10-symbols:URM23UniGene:At.28124UniProt:Q9XGN1
Coordinates (TAIR10) chr5:-:8371708..8372733
Molecular Weight (calculated) 37893.50 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.26
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)