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AT5G24490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 30S ribosomal protein, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
30S ribosomal protein, putative; FUNCTIONS IN: structural constituent of ribosome, binding; INVOLVED IN: translation, primary metabolic process; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S30Ae/sigma 54 modulation protein (InterPro:IPR003489); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1544eggNOG:ENOG410IHJUEMBL:AF370148EMBL:BT006057EMBL:CP002688EnsemblPlants:AT5G24490EnsemblPlants:AT5G24490.1
entrez:832520Gene3D:3.30.160.100GeneID:832520GO:GO:0005840GO:GO:0009507GO:GO:0009534GO:GO:0009570
GO:GO:0044238Gramene:AT5G24490.1hmmpanther:PTHR33231hmmpanther:PTHR33231:SF1InterPro:IPR003489InterPro:IPR032528KEGG:ath:AT5G24490
OMA:RINDRVGPfam:PF02482Pfam:PF16321Proteomes:UP000006548RefSeq:NP_568447.1SMR:Q94K97STRING:3702.AT5G24490.1
SUPFAM:SSF69754TAIR:AT5G24490TIGRfam:TIGR00741TIGRFAMs:TIGR00741UniGene:At.49057UniGene:At.71123UniProt:Q94K97
Coordinates (TAIR10) chr5:+:8365690..8367178
Molecular Weight (calculated) 34858.60 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.56
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLLGFSQT KFHHCGVWIS TPPCSSSSTV VSMVGLNRTD SKKLRSDFLG QIGYEDRRQV RHSYCRSSLA VKMSWDGPLA SVKLIIQGKN LELSEPIKQH
101: VEEKVGKSVQ KHSHLVREVD VRLSVRGGEF GKGPRIRRCE VTLFTKKHGV VRAEEDAETV YACIDLVSTI IQRKLRKIKE KDSDHGRHMK GFNRLKVREP
201: VIEPVVEDVE DSTDSSVGEE EEEDDLIKEI VRTKTFEMPP LTVAEAVEQL ELVSHDFYGF QNEETGEINI VYKRKEGGYG LIIPKKDGKA EKVEPLPTEQ
301: LNEHSFAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)