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AT5G24470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pseudo-response regulator 5
Curator
Summary (TAIR10)
Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. Acts as transcriptional repressor of CCA1 and LHY.
Computational
Description (TAIR10)
pseudo-response regulator 5 (PRR5); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 9 (TAIR:AT2G46790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17793eggNOG:COG5641eggNOG:KOG1601EMBL:AB025641EMBL:AB046955EMBL:AY062114EMBL:AY143934
EMBL:CP002688EnsemblPlants:AT5G24470EnsemblPlants:AT5G24470.1entrez:832518GeneID:832518Genevisible:Q6LA42GO:GO:0000160
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0048511Gramene:AT5G24470.1hmmpanther:PTHR26402hmmpanther:PTHR26402:SF569
HOGENOM:HOG000034018InParanoid:Q6LA42IntAct:Q6LA42InterPro:IPR001789InterPro:IPR010402InterPro:IPR011006iPTMnet:Q6LA42
KEGG:ath:AT5G24470KO:K12130MINT:MINT-7908672PaxDb:Q6LA42Pfam:PF00072Pfam:PF06203Pfam:Q6LA42
Pfscan:PS50110Pfscan:PS51017PhylomeDB:Q6LA42PRO:PR:Q6LA42PROSITE:PS50110PROSITE:PS51017ProteinModelPortal:Q6LA42
Proteomes:UP000006548RefSeq:NP_568446.1SMART:SM00448SMR:Q6LA42STRING:3702.AT5G24470.1SUPFAM:SSF52172TAIR:AT5G24470
tair10-symbols:APRR5tair10-symbols:PRR5TMHMM:TMhelixUniGene:At.21641UniProt:Q6LA42
Coordinates (TAIR10) chr5:-:8356204..8358873
Molecular Weight (calculated) 74840.70 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.49
Length 667 amino acids
Sequence (TAIR10)
(BLAST)
001: MWQTWPRQPI LLDIFSNPNT LSTTVRSWSV RHPLSIITVK TFARFFLDIF FSPHYYRKNK VLFFALFSFI SPLTNILICF VTVSLSLELS SSSSIIDLGF
101: SKLSVCVVIM TSSEEVVEVT VVKAPEAGGG KLSRRKIRKK DAGVDGLVKW ERFLPKIALR VLLVEADDST RQIIAALLRK CSYRVAAVPD GLKAWEMLKG
201: KPESVDLILT EVDLPSISGY ALLTLIMEHD ICKNIPVIMM STQDSVNTVY KCMLKGAADY LVKPLRRNEL RNLWQHVWRR QTSLAPDSFP WNESVGQQKA
301: EGASANNSNG KRDDHVVSGN GGDAQSSCTR PEMEGESADV EVSARDAVQM ECAKSQFNET RLLANELQSK QAEAIDFMGA SFRRTGRRNR EESVAQYESR
401: IELDLSLRRP NASENQSSGD RPSLHPSSAS AFTRYVHRPL QTQCSASPVV TDQRKNVAAS QDDNIVLMNQ YNTSEPPPNA PRRNDTSFYT GADSPGPPFS
501: NQLNSWPGQS SYPTPTPINN IQFRDPNTAY TSAMAPASLS PSPSSVSPHE YSSMFHPFNS KPEGLQDRDC SMDVDERRYV SSATEHSAIG NHIDQLIEKK
601: NEDGYSLSVG KIQQSLQREA ALTKFRMKRK DRCYEKKVRY ESRKKLAEQR PRIKGQFVRQ VQSTQAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)