AT5G24390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G49350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8327004..8329238 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60634.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.63 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||
| Length | 528 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKALRRIQTK STFPNPSSPS SPWTHLRSAF VLVTSSSPAS CSSSSDPHRL KSPWSRRKGK KPLTLRRWRR CFTPEGRIRN GGVDLLKKVR TRGIDPSIRS 101: EVWPFLLGVC DFNSSEEERG ATRTWRRKVY ERLRRQCKRL QKQNSGTFKL NKINKTTQDD EHDSWSLAQD SESSCSDDAC SVHESLISDK DNTEDIGYMS 201: DVSCTLDRDY NGSRHLNSES SDSDSSDEND YVQVAPSCEG KDENSTSPSS IYISRTKEDF VTWQRIIRLD ALRADTEWTP YSQSQALVSE NRARRAAEAV 301: GLKDYSYLEP SKIFHAARLV AVLEAYALHD PEIGYCQGMS DLLSPILSVI PDDYEAFWCF VGFMKKARQN FRVDEVGITR QLNIVSKIIK SKDSQLYKHL 401: EKVKAEDCFF VYRMVLVMFR RELTLEQTLH LWEVIWADQA AIRAGMGKSS WSRRIKQRAP PTEDLLLYVV AASVLQRRKV IIEKYSSMEE ILRECHNMVG 501: KLDVWKLLDD AHDLIVTLHA KIEHSIPQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)