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AT5G24390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.832
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G49350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5210eggNOG:KOG2197EMBL:AB016884EMBL:BT022110EMBL:CP002688EnsemblPlants:AT5G24390EnsemblPlants:AT5G24390.1
entrez:832510GeneID:832510Gramene:AT5G24390.1hmmpanther:PTHR22957hmmpanther:PTHR22957:SF312InterPro:IPR000195KEGG:ath:AT5G24390
OMA:DIGYMSDPfam:PF00566Pfscan:PS50086PhylomeDB:Q9FIN3PROSITE:PS50086Proteomes:UP000006548RefSeq:NP_197827.1
SMART:SM00164SMR:Q9FIN3STRING:3702.AT5G24390.1SUPFAM:SSF47923TAIR:AT5G24390UniGene:At.22794UniGene:At.70301
UniProt:Q9FIN3
Coordinates (TAIR10) chr5:-:8327004..8329238
Molecular Weight (calculated) 60634.80 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.58
Length 528 amino acids
Sequence (TAIR10)
(BLAST)
001: MKALRRIQTK STFPNPSSPS SPWTHLRSAF VLVTSSSPAS CSSSSDPHRL KSPWSRRKGK KPLTLRRWRR CFTPEGRIRN GGVDLLKKVR TRGIDPSIRS
101: EVWPFLLGVC DFNSSEEERG ATRTWRRKVY ERLRRQCKRL QKQNSGTFKL NKINKTTQDD EHDSWSLAQD SESSCSDDAC SVHESLISDK DNTEDIGYMS
201: DVSCTLDRDY NGSRHLNSES SDSDSSDEND YVQVAPSCEG KDENSTSPSS IYISRTKEDF VTWQRIIRLD ALRADTEWTP YSQSQALVSE NRARRAAEAV
301: GLKDYSYLEP SKIFHAARLV AVLEAYALHD PEIGYCQGMS DLLSPILSVI PDDYEAFWCF VGFMKKARQN FRVDEVGITR QLNIVSKIIK SKDSQLYKHL
401: EKVKAEDCFF VYRMVLVMFR RELTLEQTLH LWEVIWADQA AIRAGMGKSS WSRRIKQRAP PTEDLLLYVV AASVLQRRKV IIEKYSSMEE ILRECHNMVG
501: KLDVWKLLDD AHDLIVTLHA KIEHSIPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)