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AT5G24340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3'-5' exonuclease domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
3'-5' exonuclease domain-containing protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF82 (InterPro:IPR002782), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G56310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YV3MeggNOG:KOG2207EMBL:AB016884EMBL:AK227650
EMBL:BT006449EMBL:CP002688EnsemblPlants:AT5G24340EnsemblPlants:AT5G24340.1
entrez:832504Gene3D:3.30.420.10GeneID:832504GO:GO:0003676
GO:GO:0008408Gramene:AT5G24340.1hmmpanther:PTHR12124hmmpanther:PTHR12124:SF38
HOGENOM:HOG000242294InterPro:IPR002562InterPro:IPR002782InterPro:IPR012337
KEGG:ath:AT5G24340KO:K09122OMA:YLSSTFCPfam:PF01612
Pfam:PF01927PhylomeDB:Q9FIN8Proteomes:UP000006548RefSeq:NP_197822.1
SMART:SM00474SMR:Q9FIN8STRING:3702.AT5G24340.1SUPFAM:SSF53098
TAIR:AT5G24340UniGene:At.30964UniProt:Q9FIN8
Coordinates (TAIR10) chr5:+:8297328..8300156
Molecular Weight (calculated) 57705.90 Da
IEP (calculated) 8.28
GRAVY (calculated) -0.28
Length 505 amino acids
Sequence (TAIR10)
(BLAST)
001: METNLKIYLV SSTDSSEFTH LKWSFTRSTI IALDAEWKPQ HSNTSSFPTV TLLQVACRLS HATDVSDVFL IDLSSIHLPS VWELLNDMFV SPDVLKLGFR
101: FKQDLVYLSS TFTQHGCEGG FQEVKQYLDI TSIYNYLQHK RFGRKAPKDI KSLAAICKEM LDISLSKELQ CSDWSYRPLT EEQKLYAATD AHCLLQIFDV
201: FEAHLVEGIT VQDLRVINVG LQEILTESDY SSKIVTVKLC KATDVIRSMS ENGQNIANGV VPRKTTLNTM PMDENLLKIV RKFGERILLK ESDLLPKKLK
301: KKTRRRVASS TMNTNKQLVC SADWQGPPPW DSSLGGDGCP KFLLDVMVEG LAKHLRCVGI DAAIPHSKKP DSRELLDQAF KENRVLLTRD TKLLRHQDLA
401: KHQIYRVKSL LKNEQLLEVI ETFQLKISGN QLMSRCTKCN GKFIQKPLSI EEAIEAAKGF QRIPNCLFNK NLEFWQCMNC HQLYWEGTQY HNAVQKFMEV
501: CKLSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)