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AT5G24330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6
Curator
Summary (TAIR10)
Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.
Computational
Description (TAIR10)
ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (ATXR6); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (TAIR:AT5G09790.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G24330-MONOMERBioGrid:17778DIP:DIP-48530NEC:2.1.1.43eggNOG:ENOG410ITIYeggNOG:ENOG410Y5CZEMBL:AB006701
EMBL:AB016884EMBL:BT012223EMBL:BT012421EMBL:CP002688EnsemblPlants:AT5G24330EnsemblPlants:AT5G24330.1entrez:832503
Gene3D:3.30.40.10GeneID:832503Genevisible:Q9FNE9GO:GO:0005634GO:GO:0006275GO:GO:0008270GO:GO:0009901
GO:GO:0046976GO:GO:0051726GO:GO:0070734Gramene:AT5G24330.1hmmpanther:PTHR10615hmmpanther:PTHR10615:SF112HOGENOM:HOG000238747
InParanoid:Q9FNE9InterPro:IPR001214InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787
iPTMnet:Q9FNE9KEGG:ath:AT5G24330OMA:DVRCEACPaxDb:Q9FNE9Pfam:PF00628Pfam:PF00856Pfam:Q9FNE9
Pfscan:PS50016Pfscan:PS50280PhylomeDB:Q9FNE9PRIDE:Q9FNE9PRO:PR:Q9FNE9PROSITE:PS01359PROSITE:PS50016
PROSITE:PS50280ProteinModelPortal:Q9FNE9Proteomes:UP000006548RefSeq:NP_197821.1scanprosite:PS01359SMART:SM00249SMR:Q9FNE9
STRING:3702.AT5G24330.1SUPFAM:SSF57903SUPFAM:SSF82199TAIR:AT5G24330tair10-symbols:ATXR6tair10-symbols:SDG34UniGene:At.30965
UniProt:Q9FNE9
Coordinates (TAIR10) chr5:-:8295245..8296997
Molecular Weight (calculated) 39642.30 Da
IEP (calculated) 8.64
GRAVY (calculated) -0.60
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAVRRRRTQ ASNPRSEPPQ HMSDHDSDSD WDTVCEECSS GKQPAKLLLC DKCDKGFHLF CLRPILVSVP KGSWFCPSCS KHQIPKSFPL IQTKIIDFFR
101: IKRSPDSSQI SSSSDSIGKK RKKTSLVMSK KKRRLLPYNP SNDPQRRLEQ MASLATALRA SNTKFSNELT YVSGKAPRSA NQAAFEKGGM QVLSKEGVET
201: LALCKKMMDL GECPPLMVVF DPYEGFTVEA DRFIKDWTII TEYVGDVDYL SNREDDYDGD SMMTLLHASD PSQCLVICPD RRSNIARFIS GINNHSPEGR
301: KKQNLKCVRF NINGEARVLL VANRDISKGE RLYYDYNGYE HEYPTEHFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)