suba logo
AT5G24280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gamma-irradiation and mitomycin c induced 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 (GMI1); BEST Arabidopsis thaliana protein match is: defective in meristem silencing 3 (TAIR:AT3G49250.1); Has 114 Blast hits to 102 proteins in 24 species: Archae - 0; Bacteria - 7; Metazoa - 8; Fungi - 4; Plants - 91; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE6CeggNOG:ENOG410ZHRWEMBL:CP002688EnsemblPlants:AT5G24280
EnsemblPlants:AT5G24280.1entrez:832495Gene3D:3.30.565.10GeneID:832495
Gramene:AT5G24280.1hmmpanther:PTHR33566hmmpanther:PTHR33566:SF1InParanoid:F4KFS5
InterPro:IPR003594KEGG:ath:AT5G24280ncoils:CoilOMA:HNNNVYA
PaxDb:F4KFS5Pfam:PF13589PRIDE:F4KFS5ProteinModelPortal:F4KFS5
Proteomes:UP000006548RefSeq:NP_197816.3STRING:3702.AT5G24280.1SUPFAM:SSF55874
TAIR:AT5G24280tair10-symbols:GMI1UniGene:At.70766UniProt:F4KFS5
Coordinates (TAIR10) chr5:-:8251378..8261401
Molecular Weight (calculated) 179134.00 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.36
Length 1598 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSSRRSVKRS LVLDDDDDED IFYNFKVLLP NGTSVKLTLK NPEPEISMQS FVNLVKKEYD NARKDCLLMS KRMKVDWNSG GKFHLESNGG KMKGIVRFAA
0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG
0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRCDFSFCLP ILICIVLLRL TLFSVRRTLV SSKTKESKKV FTLQFKKEAL IDNRSIVGKN
0301: WKTDGGMRDP SEEEMKLSPH GSFTKVEIFE SEFDISKIYQ LQCRLKDIYF PYIQFCLATI FLCDELSKTG RTERPVAFQV NGEDLAEIAG GEVAITNLHS
0401: KGQFFSFQIR FTLFGGKRKG TAQEANARLK FVYFPIVQGK ESIEKILQSL EEEGCKVSES FQTFGRVSLR RLGRLLPEVR WDSIPFMQRG NRASTLQKSC
0501: RRVKCFVDLD AGFSPTPSKT DLASQNPFSV ALRNFGSKST EKEKDDDVNI VIHREGKSVS YAHLEEKYQE WVLEMHNTHD EEAASGLDEA VLIVGSLDKK
0601: ALGILRDAVR VHKEVRRKEK TWKRGQNIKI LRGAYAGIHN NNVYATIDYF LIEGFEDEAG GDTRILCRPI DRPENEGCKL SIIDGISKLE VQSSLSLPIT
0701: IIDSGKCLPV DANEWNRKLD KQQEKAPSKI DLLDERDCRE LKIDGELPIG NSVRAGKAPP KQIVAVVRPA CFTSLTPSKK LDQKNIVKMD GEEMVMVVKL
0801: KSSDKNISSQ RLFPTSRKGI SGLYIFSLGS KFPNLFKKAG TYNFSFSIGN SIKCNKTVVV RPSSKAARWE LDDNLESLPC NVRVGSSLPP FRIACFDKYK
0901: NKIPFTSVPS LEVELEASPG FLIKIDKLET NLINDGLILK IENMLVETDE LDQIRPNYEA TLEIRAMDNP FSVSVPCKVN PGPLKRVAVN NPKALENLLP
1001: DSTVEDFILE LFDGYNNHVA EGTDVLIHID GYRIEDWMGI NRKVDSRGCI NLSGILKVTE GYGKSVSLSV MSGNEVIFCK ESQIDERQLR LVTELPDCCT
1101: AGTNLMNLIF QVTELDGSLD TSIHHDEKSG CFHTMSIESD SSSVESAIRY AFVHGSCKVS SLSLPENEGV FSCRVFHSRY PELQMSIKIQ VTSAPTSERE
1201: ESGYSTPHSK TTPPPESGIP SITNPWPTPC SQFGVLAIRS SSLALSSETS LMDMAQYTED LKEKINIDEE RRVELEERLK CLQAQREHAE QECSRLQASL
1301: EPLGAPFPEC LSTKESMMKQ IEEKHHDTAA SVFCCLYRKA PPPRSLFLSQ KGMFGVVALL GSVASTSLSR VLSEYLGKDT MLSLVCKSSQ FGPKSDEYRK
1401: FQSEAASLGR SITNRFLVIC LDATRPWRNG LVRNDPQKRL AMDNPYLPNG DPIPGFKGYA VNMIDLASEE LDIQSSSGYG LRETLFYGVF RELQVYETAE
1501: HLEAALPHIN GGDAVSLDGV IARENGFIYS GCCTPEVHFP ITVTERQEKA LVQLEITRDK KRKTEEMMTE ENRSLRRLVK KLKKANEKYQ NFTAMADS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)