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AT5G24270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.
Computational
Description (TAIR10)
SALT OVERLY SENSITIVE 3 (SOS3); CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 8 (TAIR:AT1G64480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17769DIP:DIP-34746NeggNOG:COG5126eggNOG:KOG0034EMBL:AB006701EMBL:AF060553EMBL:AF192886
EMBL:AY063993EMBL:AY096693EMBL:CP002688EMBL:Y18870EnsemblPlants:AT5G24270EnsemblPlants:AT5G24270.1EnsemblPlants:AT5G24270.2
entrez:832494EvolutionaryTrace:O81223ExpressionAtlas:O81223Gene3D:1.10.238.10GeneID:832494Genevisible:O81223GO:GO:0004723
GO:GO:0005509GO:GO:0005513GO:GO:0005634GO:GO:0005737GO:GO:0005886GO:GO:0005955GO:GO:0006470
GO:GO:0030007GO:GO:0042539Gramene:AT5G24270.1Gramene:AT5G24270.2hmmpanther:PTHR23056hmmpanther:PTHR23056:SF45HOGENOM:HOG000233019
InParanoid:O81223IntAct:O81223InterPro:IPR002048InterPro:IPR011992KEGG:ath:AT5G24270KO:K06268OMA:KDNPYVL
PaxDb:O81223PDB:1V1FPDB:1V1GPDB:2EHBPDBsum:1V1FPDBsum:1V1GPDBsum:2EHB
Pfam:O81223Pfam:PF13202Pfam:PF13499Pfscan:PS50222PhylomeDB:O81223PRIDE:O81223PRO:PR:O81223
PROSITE:PS50222ProteinModelPortal:O81223Proteomes:UP000006548RefSeq:NP_001190377.1RefSeq:NP_197815.1SMART:SM00054SMR:O81223
STRING:3702.AT5G24270.1SUPFAM:SSF47473TAIR:AT5G24270tair10-symbols:ATSOS3tair10-symbols:CBL4tair10-symbols:SOS3UniGene:At.20610
UniProt:M5BF43UniProt:O81223
Coordinates (TAIR10) chr5:-:8238781..8240179
Molecular Weight (calculated) 25694.90 Da
IEP (calculated) 4.87
GRAVY (calculated) -0.31
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCSVSKKKK KNAMRPPGYE DPELLASVTP FTVEEVEALY ELFKKLSSSI IDDGLIHKEE FQLALFRNRN RRNLFADRIF DVFDVKRNGV IEFGEFVRSL
101: GVFHPSAPVH EKVKFAFKLY DLRQTGFIER EELKEMVVAL LHESELVLSE DMIEVMVDKA FVQADRKNDG KIDIDEWKDF VSLNPSLIKN MTLPYLKDIN
201: RTFPSFVSSC EEEEMELQNV SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)