AT5G24230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.823 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Lipase class 3-related protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Lipase class 3-related protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: Lipase class 3-related protein (TAIR:AT5G24220.1); Has 233 Blast hits to 232 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 10; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8229182..8230841 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41547.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.33 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 369 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEEDDEVMV REGLMASQRE IFSISGPIHL TSIDWNNSYH RTSVASCLVQ AVYTLERDRQ QNRIGLKSQA NHWWEFFNFT LAETLIDDSD GSIYGAVFEY 101: KHFFSYNYHH TPHSKPPPRH VIAFRGTILK PHSRSRDLKL DLRCIRDSLH DSTRFVHAIQ VIQSAVAKTG NAAVWLAGHS LGAAVALLAG KIMTRSGFPL 201: ESYLFNPPFS SIPIEKLVKS EKLKHGVRFA GSLVKAGVAI AVKGRHHNKG QEDDSFMKLA SWIPYLYLNP LDTICSEYIG YFKHRNKMFE IGAGKIERIA 301: TRNSLRSLLS GGGGGGSSSD SSSEPLHLLP SAYMTINASK SPNFKRAHGI HQWWDPMFNG EYVLHQFNN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)