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AT5G24120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sigma factor E
Curator
Summary (TAIR10)
Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.
Computational
Description (TAIR10)
sigma factor E (SIGE); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630), RNA polymerase sigma-70 factor (InterPro:IPR000943); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17752DIP:DIP-60440NeggNOG:COG0568eggNOG:ENOG410IIZSEMBL:AB010696EMBL:AB021120EMBL:AK221445
EMBL:AK316888EMBL:AY045660EMBL:CP002688EMBL:Y18550EnsemblPlants:AT5G24120EnsemblPlants:AT5G24120.1entrez:832477
Gene3D:1.10.10.10GeneID:832477Genevisible:Q9ZNX9GO:GO:0001053GO:GO:0003677GO:GO:0003700GO:GO:0005739
GO:GO:0006352GO:GO:0009507GO:GO:0009658GO:GO:0010114GO:GO:0010207GO:GO:0010218GO:GO:0016987
GO:GO:0045893GO:GO:0071483GO:GO:2001141hmmpanther:PTHR30603hmmpanther:PTHR30603:SF4HOGENOM:HOG000241625InParanoid:Q9ZNX9
InterPro:IPR000943InterPro:IPR007624InterPro:IPR007627InterPro:IPR007630InterPro:IPR011991InterPro:IPR013324InterPro:IPR013325
InterPro:IPR014284iPTMnet:Q9ZNX9KEGG:ath:AT5G24120KO:K03093ncoils:CoilOMA:PERYHEVPaxDb:Q9ZNX9
Pfam:PF04539Pfam:PF04542Pfam:PF04545Pfam:Q9ZNX9PhylomeDB:Q9ZNX9PIR:T51328PRIDE:Q9ZNX9
PRINTS:PR00046PRO:PR:Q9ZNX9ProteinModelPortal:Q9ZNX9Proteomes:UP000006548RefSeq:NP_197800.1SMR:Q9ZNX9STRING:3702.AT5G24120.1
SUPFAM:SSF88659SUPFAM:SSF88946TAIR:AT5G24120tair10-symbols:ATSIG5tair10-symbols:SIG5tair10-symbols:SIGETIGRfam:TIGR02937
TIGRFAMs:TIGR02937UniGene:At.5425UniProt:Q9ZNX9
Coordinates (TAIR10) chr5:-:8157794..8159746
Molecular Weight (calculated) 58816.60 Da
IEP (calculated) 10.59
GRAVY (calculated) -0.56
Length 517 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)