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AT5G23940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.973
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : HXXXD-type acyl-transferase family protein
Curator
Summary (TAIR10)
Encodes PERMEABLE LEAVES3 (PEL3), a putative acyl-transferase. Mutation in this locus results in altered trichome phenotype (trcichomes become tangled during leaf expansion). Additional phenotype includes altered cuticle layer.
Computational
Description (TAIR10)
PERMEABLE LEAVES3 (PEL3); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: epidermis morphogenesis, localization, trichome morphogenesis, cutin biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT2G39980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G23940-MONOMERBioGrid:17734DNASU:832459EC:2.3.1.-eggNOG:ENOG410IHZEeggNOG:ENOG410YJA8EMBL:AB005244
EMBL:AY128300EMBL:BT000770EMBL:BT001043EMBL:CP002688EnsemblPlants:AT5G23940EnsemblPlants:AT5G23940.1entrez:832459
Gene3D:3.30.559.10GeneID:832459Genevisible:Q9FF86GO:GO:0005737GO:GO:0005829GO:GO:0010090GO:GO:0010143
GO:GO:0016747GO:GO:0051179GO:GO:0090626Gramene:AT5G23940.1hmmpanther:PTHR31896hmmpanther:PTHR31896:SF4HOGENOM:HOG000237787
InParanoid:Q9FF86IntAct:Q9FF86InterPro:IPR003480InterPro:IPR023213KEGG:ath:AT5G23940KO:K19747OMA:LEASVME
PaxDb:Q9FF86Pfam:PF02458Pfam:Q9FF86PhylomeDB:Q9FF86PRIDE:Q9FF86PRO:PR:Q9FF86ProteinModelPortal:Q9FF86
Proteomes:UP000006548RefSeq:NP_197782.1SMR:Q9FF86STRING:3702.AT5G23940.1TAIR:AT5G23940tair10-symbols:DCRtair10-symbols:EMB3009
tair10-symbols:PEL3UniGene:At.21523UniGene:At.70475UniGene:At.74820UniProt:Q9FF86
Coordinates (TAIR10) chr5:-:8076616..8079677
Molecular Weight (calculated) 53517.30 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.31
Length 484 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIKIMSKTH VKPTKPVLGK KQFHLTTFDL PYLAFYYNQK FLLYKFQNLL DLEEPTFQNE VVENLKDGLG LVLEDFYQLA GKLAKDDEGV FRVEYDAEDS
101: EINGVEFSVA HAADVTVDDL TAEDGTAKFK ELVPYNGILN LEGLSRPLLA VQVTKLKDGL AMGLAFNHAV LDGTSTWHFM SSWAEICRGA QSISTQPFLD
201: RSKARDTRVK LDLTAPKDPN ETSNGEDAAN PTVEPPQLVE KIFRFSDFAV HTIKSRANSV IPSDSSKPFS TFQSLTSHIW RHVTLARGLK PEDITIFTVF
301: ADCRRRVDPP MPEEYFGNLI QAIFTGTAAG LLAAHGPEFG ASVIQKAIAA HDASVIDARN DEWEKSPKIF QFKDAGVNCV AVGSSPRFRV YEVDFGFGKP
401: ETVRSGSNNR FNGMMYLYQG KAGGISIDVE ITLEASVMEK LVKSKEFLLS EEEEEDDGKK LTNGNGHVNG NGNGYVNGNG NGFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)