suba logo
AT5G23860.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:14505352 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tubulin beta 8
Curator
Summary (TAIR10)
beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers.
Computational
Description (TAIR10)
tubulin beta 8 (TUB8); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to cyclopentenone, response to salt stress, response to cold; LOCATED IN: tubulin complex, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17726eggNOG:COG5023eggNOG:KOG1375EMBL:AB005244EMBL:AY054693EMBL:AY081473EMBL:CP002688
EMBL:M84705EnsemblPlants:AT5G23860EnsemblPlants:AT5G23860.1EnsemblPlants:AT5G23860.2entrez:832451Gene3D:1.10.287.600Gene3D:3.30.1330.20
Gene3D:3.40.50.1440GeneID:832451Genevisible:P29516GO:GO:0003924GO:GO:0005200GO:GO:0005525GO:GO:0005794
GO:GO:0005874GO:GO:0007017GO:GO:0009651GO:GO:0016020GO:GO:0045298Gramene:AT5G23860.1Gramene:AT5G23860.2
hmmpanther:PTHR11588hmmpanther:PTHR11588:SF114HOGENOM:HOG000165710InParanoid:P29516IntAct:P29516InterPro:IPR000217InterPro:IPR002453
InterPro:IPR003008InterPro:IPR008280InterPro:IPR013838InterPro:IPR017975InterPro:IPR018316InterPro:IPR023123KEGG:ath:AT5G23860
KO:K07375ncoils:CoilOMA:RYQGENDPANTHER:PTHR11588PaxDb:P29516Pfam:P29516Pfam:PF00091
Pfam:PF03953PhylomeDB:P29516PIR:JQ1592PRIDE:P29516PRINTS:PR01161PRINTS:PR01163PRO:PR:P29516
PROSITE:PS00227PROSITE:PS00228ProteinModelPortal:P29516Proteomes:UP000006548RefSeq:NP_001190373.1RefSeq:NP_568437.1scanprosite:PS00227
scanprosite:PS00228SMART:SM00864SMART:SM00865SMR:P29516STRING:3702.AT5G23860.1SUPFAM:SSF52490SUPFAM:SSF55307
TAIR:AT5G23860tair10-symbols:TUB8UniGene:At.330UniGene:At.67084UniProt:P29516
Coordinates (TAIR10) chr5:+:8042962..8044528
Molecular Weight (calculated) 50609.80 Da
IEP (calculated) 4.46
GRAVY (calculated) -0.38
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)