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AT5G23850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.969
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis thaliana protein of unknown function (DUF821)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G48980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
CAZy:GT90eggNOG:ENOG410XT5UeggNOG:KOG2458EMBL:AB005244
EMBL:AK221455EMBL:BT014854EMBL:CP002688EMBL:KJ138669
EnsemblPlants:AT5G23850EnsemblPlants:AT5G23850.1entrez:832450GeneID:832450
GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0016021
GO:GO:0016740Gramene:AT5G23850.1hmmpanther:PTHR12203hmmpanther:PTHR12203:SF32
HOGENOM:HOG000240927InterPro:IPR006598KEGG:ath:AT5G23850OMA:WINREPY
Pfam:PF05686PhylomeDB:Q9FF95Proteomes:UP000006548RefSeq:NP_197774.1
SMART:SM00672STRING:3702.AT5G23850.1TAIR:AT5G23850TMHMM:TMhelix
UniGene:At.30989UniProt:Q9FF95
Coordinates (TAIR10) chr5:+:8038126..8040741
Molecular Weight (calculated) 62590.20 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.56
Length 542 amino acids
Sequence (TAIR10)
(BLAST)
001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)