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AT5G23680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.811
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sterile alpha motif (SAM) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sterile alpha motif (SAM) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G48800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41122EEeggNOG:KOG4374EMBL:AB025633EMBL:AY085468EMBL:BT026063EMBL:CP002688EnsemblPlants:AT5G23680
EnsemblPlants:AT5G23680.1entrez:832433Gene3D:1.10.150.50GeneID:832433Gramene:AT5G23680.1hmmpanther:PTHR10627HOGENOM:HOG000240558
InterPro:IPR001660InterPro:IPR013761KEGG:ath:AT5G23680OMA:YDSHARRPfam:PF07647Pfscan:PS50105PhylomeDB:Q9LSZ8
PROSITE:PS50105Proteomes:UP000006548RefSeq:NP_197757.1SMART:SM00454SMR:Q9LSZ8STRING:3702.AT5G23680.1SUPFAM:SSF47769
TAIR:AT5G23680UniGene:At.23395UniGene:At.49054UniProt:Q9LSZ8
Coordinates (TAIR10) chr5:-:7985573..7986460
Molecular Weight (calculated) 32554.70 Da
IEP (calculated) 5.08
GRAVY (calculated) -0.91
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MAELQLVEGH QINGGFIPPA IINSIEAPET SAAAGVSVGS KRLRRPSVRL GDIGGDQYHQ HVVAAYDSPQ VRRPKWRPSG GGGGGGGNRK EPNNQSGKTT
101: SSSRTRTMTN LSSGGYENTG TLDEDPVSIG SWRVKKWVKS SGGETAATTT TNTASAKRVR SNWATRNDGV EQGDEKFSGE EEEEEEDEEL GGEEGFRDFS
201: REDSESPMKE RRRYENREVE LLGDWQSGGR GKEGVKIWLQ ELGLGRYWPM FEMHEVDEQV LPLLTLEDLK DMGINAVGSR RKMYCAIQKL GREFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)