AT5G23610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: SWITCH1 (TAIR:AT5G51330.1); Has 170 Blast hits to 162 proteins in 36 species: Archae - 3; Bacteria - 6; Metazoa - 6; Fungi - 4; Plants - 117; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7957641..7959968 | ||||||||||||||||||||
| Molecular Weight (calculated) | 56477.90 Da | ||||||||||||||||||||
| IEP (calculated) | 6.07 | ||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPPLREKTL AAIYNLKRRK RSDKKICRKE PNDSAMAAGP VVIKRETEDT PGEEEEGNTS RDNALVEVKL EKQEELGLLV TCGIQKRKRL ARGARSRRYS 101: DTSFEEKPII IPPKHKQQRV LTTRWNNERI KFAEQTLADI MKEKGATFEK PVTRQLLRVI ARSKIGDTGL LDHSLKHMDG KVTPGGSDRF RRCYNTDGCM 201: QYWLESADLV KIKLESGIPD PTWVPPAWWM VQTASSHDQS AVTSKLLMGE IEQMKSEIKE LVSKQNLPDH ADANEKLFKE LKSWRENTDK QIVEISESLT 301: STQGMFKELN SWKDKVDQQL LGISNTLSNL QPNGSTSFSP AQENWEHILK TSNLEDFTTN GFDQWDDLID GLPEAVRPET YALPTNPCKS SLQDQSLISL 401: QDQSLVSLQD QSLVNVDMQM TESMTRGESR SSSQEKAEMT PGSSITAGPK SDIDDPTIQT QETLKELVTW KAKAEQQLME LSNAVLALKG QNQPNWRYP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)