AT5G23575.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane CLPTM1 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transmembrane CLPTM1 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: callus, leaf; CONTAINS InterPro DOMAIN/s: Cleft lip and palate transmembrane 1 (InterPro:IPR008429); BEST Arabidopsis thaliana protein match is: Transmembrane CLPTM1 family protein (TAIR:AT5G08500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:7946563..7950041 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68612.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.16 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||
| Length | 593 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPPAGQTAA VAEAAGADGA PPQQQRGFGS TISGIVRIAV FWYFASKFFS PKQKPMDPTA PSQLMTNLFH KGESLDMWFY LSEQEKFNDF GNDRALYWHE 101: TNIPYAVWTP ESIRTKSLTY YPSETLQNNG SLYAHIFFAR SGFPIDPTDP EYQPLNSFSR THAVATYFPK QKKNKKKSLL GSPKDSDESE PEVEKVGDKK 201: SDPKEEVPVE WISLWKPNVT INLVDDFTHY SQNGVPPNIA PHLLVEPTTG NYYPTIYFNE FWLLRDKFIP VNETVSELPL NLEISPISMM KWQLFQQVDQ 301: SFQMQRSYGS MLDGESDELK KVFLEGNPYL LGITMFVSML HSVFDFLAFK NDIQFWNKNK SMEGLSAKSV VLNFICQFVI FLYLLDNDTS WMILASSGVG 401: VCIEFWKIGK AMRIEVDRSG MIPRLRFHDR ESYASNKTKE YDDIAIKFLS YVLLLLVIGL SIYSLAYERH KSWYSWILSS LTSCVYMFGF IMMCPQLFIN 501: YKLKSVAHLP WRQMTYKFLN TIIDDLFAFV IKMPILHRLS VFRDDVIFLI YLYQRWVYPV DKTRVNEFGF GGEDETAEKK LITEKEEEDK KTN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)