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AT5G23520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.895
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : smr (Small MutS Related) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
smr (Small MutS Related) domain-containing protein; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISZVeggNOG:ENOG410YAMKEMBL:AB025633EMBL:AY136434EMBL:BT000216EMBL:CP002688EnsemblPlants:AT5G23520
EnsemblPlants:AT5G23520.1entrez:832417GeneID:832417GO:GO:0005737Gramene:AT5G23520.1hmmpanther:PTHR13308HOGENOM:HOG000083818
InterPro:IPR002625InterPro:IPR013899KEGG:ath:AT5G23520OMA:EIFHLRNPfam:PF01713Pfam:PF08590Pfscan:PS50828
PhylomeDB:Q9LT11PROSITE:PS50828Proteomes:UP000006548RefSeq:NP_197743.1SMART:SM00463SMART:SM01162SUPFAM:0053808
SUPFAM:SSF160443TAIR:AT5G23520UniGene:At.43963UniProt:Q9LT11
Coordinates (TAIR10) chr5:-:7929591..7931296
Molecular Weight (calculated) 49119.20 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.83
Length 435 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWMKGKSSG WTAFDLKQRQ KQGLESEVEG DPFPPVSTSV NASFGVRGRL RRNHEPSEKS FSSVLLPPSR FPALTENKDC GNQERGGCCR RKPDTLSLPV
101: NSHDLAFTKL KEMNSWADDN LIRDVLLSTE DDFEMALAFL KGMVSSGKED EEPTSKIEGY SSDNRRSEYR TFEKTVTSSV KMAARSTFED AGKYDLENSD
201: GSSFLVNASD NEKFPDDISE LDSIIQRLQS IPIEPEWEED DLYLSHRKDA LKVMRSASNH SRAAQNAFQR YDHASAKQHS DKAREDWLAA EKLNAEAAKK
301: IIGITNKDND IWKLDLHGLH ATEAVQALQE RLQMIEGHFT VNRSVSPNRG RSKNAALRSA SQEPFGRLDE EGMHCQRTSS RELRNSLQVI TGIGKHSRGQ
401: ASLPLAVKTF FEDNRYRFDE TRPGVITVRP KFRHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)