AT5G23480.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : SWIB/MDM2 domain;Plus-3;GYF | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G08430.1); Has 628 Blast hits to 541 proteins in 110 species: Archae - 0; Bacteria - 43; Metazoa - 166; Fungi - 57; Plants - 154; Viruses - 1; Other Eukaryotes - 207 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:7916314..7919155 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65165.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.47 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 570 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDDNEKVKG SSKKRLRKPK SLEFVGWGSR NLIEFLESLG RDTTNKISEN DVTAIIMNYI REKSRETPLK SKKRRKTVAC DEKLRLLFGA GKINVIKVPD 101: LVEKHYVENQ EEDLFYDDLY ASEDDKQQRL SLSDKVAKQT KQVVSKPRGT FAAIVRDTVK LLYLRKSLVQ ELAKTPETFE SKVVRTFVRI KNPCQLVHVT 201: GVKEGDPIDG NLFQVTNYSY YLKDVTTSSL SDDDFSQEEC EELHQRINNG FAKRLTVVDM EEKARSLHED YLEKRELLQN PDEQKRLVDE VPEIVAEELE 301: PECEDDDDDR TIEDSLIVPN PEAHQSDKEQ RQRDLPVSSS VKKSQENSLL LKNPEEQLRL LCDVPDVVAE KLEPEFVDDD GKLVNDATVP NPEAFTEAHQ 401: SDEEIQPSDL PDSSIQKTLE DQPIWTASAG NKDLHEDVYE PPANGITLNT DSITEGEMNT KVSQHQSSTP VIDLSNKTQA HSNPIEIIEL SDDDDDDEKD 501: KNDQAYQSYD PKKVMWFYEY PKGKTHGPFS LTDLKTWSDE EYFVGVPDFK VWKTGESAVL LTKLLSQIKT |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)