AT5G23450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : long-chain base (LCB) kinase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
long-chain base (LCB) kinase 1 (LCBK1); FUNCTIONS IN: diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, sphingolipid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: sphingosine kinase 1 (TAIR:AT4G21540.1); Has 4352 Blast hits to 4113 proteins in 1166 species: Archae - 8; Bacteria - 2944; Metazoa - 550; Fungi - 174; Plants - 282; Viruses - 0; Other Eukaryotes - 394 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7905041..7908960 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83596.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 763 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQKSGVNRNP SLKVAIPQAQ QSLRRLGFCS QIATGGSQQS SPIVFPEKRN KKVKASSRRG EVTNDPQVKP KPDEHRIDIG GGDEKSDLLG SLVYAGKLVL 101: DKRKSASGKD ATEIQQPAAT DISIKKAVDA KLTSSALVWG SDMLQLNDVV SVTYNVGLRH FTVHAYPIGK GSCGLSCFTK PKRSRKDFRF VAPTVEEAVQ 201: WVASFGDQQC FINCLPHPLV AKKQASSELF SVPIDTPPEL VFRCKSAPKM LVILNPRSGH GRSIKVFHNV VEPIFKLAGI KMEVVKTTKA GHARELASTV 301: DINLCSDGII CVGGDGIINE VLNGLLTRSN PKEGVSIPIG IVPAGSDNSL VWTVLGVRDP ISAALSIVKG GLTATDVFAV EWIHTGIIHF GMTVSYYGFV 401: SDVLELSEKY QKRFGPLRYF VAGFLKFMCL PKYSYEVEYL PAQKEDAEGK IRLEKEAVDM QDLYTDVMRR SSREGFPRAS SLSSIDSIMT PSVGELDTCS 501: STHASTEPSE YVRGIDPKMK RLSSGRRDVT AEPEVIHPQA QSTTPNWPRT RSKSRMDKGW MGLTSVQDPP TRCSWGNTGG QDREDISSTV SDPGPIWDAG 601: PKWDTEPSAW DVENSIELPG PPEDIETGLR KQSITPIFED KWVSRKGHFL GIMVCNHACR TVQSSQVVAP NSEHDDGTMD MLLVHGCGRL RLLRFFILLQ 701: TGRHLSLPYV ECVKVKSVKI KAGKNTHDSC GIDGELFALH GEVISTMLPE QCRLIGNAPG RHS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)