suba logo
AT5G23440.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ferredoxin/thioredoxin reductase subunit A (variable subunit) 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 (FTRA1); FUNCTIONS IN: ferredoxin:thioredoxin reductase activity, catalytic activity, ferredoxin reductase activity; INVOLVED IN: photosynthesis, light reaction, photosynthesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin thioredoxin reductase, alpha chain (InterPro:IPR004207), Electron transport accessory protein (InterPro:IPR008990); BEST Arabidopsis thaliana protein match is: ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (TAIR:AT5G08410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2WSeggNOG:ENOG41101H7EMBL:AB018110EMBL:AK221457EMBL:BT012165EMBL:CP002688EnsemblPlants:AT5G23440
EnsemblPlants:AT5G23440.1entrez:832410GeneID:832410GO:GO:0009107GO:GO:0009249GO:GO:0009507GO:GO:0015979
GO:GO:0016992GO:GO:0051539Gramene:AT5G23440.1hmmpanther:PTHR10949hmmpanther:PTHR10949:SF11HOGENOM:HOG000239293InterPro:IPR003698
InterPro:IPR004207InterPro:IPR008990KEGG:00785+2.8.1.8KEGG:ath:AT5G23440OMA:DYVAVWKPANTHER:PTHR10949Pfam:PF02941
PhylomeDB:Q9FHL4ProDom:PD015034Proteomes:UP000006548RefSeq:NP_197735.1SMR:Q9FHL4STRING:3702.AT5G23440.1SUPFAM:SSF50090
TAIR:AT5G23440tair10-symbols:FTRA1UniGene:At.43944unipathway:UPA00538UniProt:Q9FHL4
Coordinates (TAIR10) chr5:-:7903230..7903778
Molecular Weight (calculated) 19825.60 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.25
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSQIALSPA IAAAIRRPSS HDCLSASATT ATATPMALKS CIVAPLSLFT SQSQIKHSSS RKTSRTTIRC DVAIKSADSI NADANPSSSP SSEEEIEAEA
101: KAKIGSRVRV TAPLKVYHVN RVPEVDLEGM EGKLKDYVAV WKGKRISANL PYKIEFFKEI EGRGLVKFVS HLKEDEFEFI DQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)