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AT5G23420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : high-mobility group box 6
Curator
Summary (TAIR10)
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Computational
Description (TAIR10)
high-mobility group box 6 (HMGB6); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG-box (high mobility group) DNA-binding family protein (TAIR:AT5G23405.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5648eggNOG:KOG0381EMBL:AB018110EMBL:AK118688
EMBL:AY086023EMBL:CP002688EnsemblPlants:AT5G23420EnsemblPlants:AT5G23420.1
entrez:832408ExpressionAtlas:Q8LDF9Gene3D:1.10.30.10GeneID:832408
Genevisible:Q8LDF9GO:GO:0000741GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006355GO:GO:0010197hmmpanther:PTHR13711
hmmpanther:PTHR13711:SF147HOGENOM:HOG000242532InParanoid:Q8LDF9InterPro:IPR009071
iPTMnet:Q8LDF9ncoils:CoilOMA:EECKKDVPaxDb:Q8LDF9
Pfam:PF00505Pfam:Q8LDF9Pfscan:PS50118PhylomeDB:Q8LDF9
PRIDE:Q8LDF9PRO:PR:Q8LDF9PROSITE:PS50118ProteinModelPortal:Q8LDF9
Proteomes:UP000006548RefSeq:NP_568431.1SMART:SM00398SMR:Q8LDF9
STRING:3702.AT5G23420.1SUPFAM:SSF47095TAIR:AT5G23420tair10-symbols:HMGB6
UniGene:At.31011UniProt:Q8LDF9
Coordinates (TAIR10) chr5:-:7888712..7890111
Molecular Weight (calculated) 26982.80 Da
IEP (calculated) 4.55
GRAVY (calculated) -1.27
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)