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AT5G23320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18641086 (2008): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of yeast STE14 A
Curator
Summary (TAIR10)
Encodes a prenylcysteine alpha-carboxyl methyltransferase involved in methylation of isoprenylated proteins. This protein appears to have lower catalytic activity and a lower transcript expression level than the other ICMT present in Arabidopsis (At5g08335). Analysis of ICMT RNAi lines suggests that this protein may be involved in flower and stem development.
Computational
Description (TAIR10)
homolog of yeast STE14 A (STE14A); CONTAINS InterPro DOMAIN/s: Isoprenylcysteine carboxyl methyltransferase (InterPro:IPR007269); BEST Arabidopsis thaliana protein match is: Isoprenylcysteine carboxyl methyltransferase (ICMT) family (TAIR:AT5G08335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G23320-MONOMERBioCyc:MetaCyc:AT5G23320-MONOMERBioGrid:17671EC:2.1.1.100eggNOG:COG2020eggNOG:KOG2628EMBL:AB007648
EMBL:CP002688EMBL:DQ446977EMBL:DQ653301EnsemblPlants:AT5G23320EnsemblPlants:AT5G23320.1entrez:832396GeneID:832396
Genevisible:Q9FMW9GO:GO:0004671GO:GO:0005783GO:GO:0005789GO:GO:0006481GO:GO:0009788GO:GO:0009908
GO:GO:0010340GO:GO:0016021GO:GO:0048367Gramene:AT5G23320.1hmmpanther:PTHR12714HOGENOM:HOG000213961InParanoid:Q9FMW9
InterPro:IPR007269InterPro:IPR025770KEGG:ath:AT5G23320KO:K00587OMA:VYRFVRHPaxDb:Q9FMW9Pfam:PF04140
Pfam:Q9FMW9Pfscan:PS51564PhylomeDB:Q9FMW9PRO:PR:Q9FMW9PROSITE:PS51564ProteinModelPortal:Q9FMW9Proteomes:UP000006548
Reactome:R-ATH-163841RefSeq:NP_197723.1SABIO-RK:Q9FMW9SMR:Q9FMW9STRING:3702.AT5G23320.1TAIR:AT5G23320tair10-symbols:ATICMTA
tair10-symbols:ATPCMtair10-symbols:ATSTE14tair10-symbols:ATSTE14Atair10-symbols:ICMTAtair10-symbols:STE14tair10-symbols:STE14ATMHMM:TMhelix
UniGene:At.54958UniProt:Q9FMW9
Coordinates (TAIR10) chr5:+:7853368..7853961
Molecular Weight (calculated) 22526.80 Da
IEP (calculated) 7.32
GRAVY (calculated) 0.61
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEIFSDTSI RQLSQMLLSL IFFHISEYIL AITIHGASNV TLSSLLITKH YALAMLLSLL EYLTEIILFP GLKQHWWVSN FGLIMIIVGE IIRKAAIITA
101: GRSFTHLIKI NYEEHHGLVT HGVYRLMRHP SYCGFLIWSV GTQVMLCNPV SAVAFAVVVW RFFAQRIPYE EYFLNQFFGV QYLEYAESVA SGVPFVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)