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AT5G23310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Fe superoxide dismutase 3
Curator
Summary (TAIR10)
Fe superoxide dismutase
Computational
Description (TAIR10)
Fe superoxide dismutase 3 (FSD3); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: removal of superoxide radicals; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17670EC:1.15.1.1eggNOG:COG0605eggNOG:KOG0876EMBL:AB007648EMBL:AF061852EMBL:AY065458
EMBL:AY086656EMBL:AY091225EMBL:CP002688EnsemblPlants:AT5G23310EnsemblPlants:AT5G23310.1entrez:832395GeneID:832395
Genevisible:Q9FMX0GO:GO:0004784GO:GO:0009295GO:GO:0009507GO:GO:0009534GO:GO:0009579GO:GO:0019430
GO:GO:0042644GO:GO:0042646GO:GO:0046872GO:GO:0055114Gramene:AT5G23310.1gramene_pathway:1.15.1.1gramene_pathway:DETOX1-PWY
hmmpanther:PTHR11404hmmpanther:PTHR11404:SF17HOGENOM:HOG000013584InParanoid:Q9FMX0IntAct:Q9FMX0InterPro:IPR001189InterPro:IPR019831
InterPro:IPR019832InterPro:IPR019833KEGG:ath:AT5G23310KO:K04564OMA:EPNIPIAPANTHER:PTHR11404PaxDb:Q9FMX0
Pfam:PF00081Pfam:PF02777Pfam:Q9FMX0PhylomeDB:Q9FMX0PIR:T51732PRIDE:Q9FMX0PRINTS:PR01703
PRO:PR:Q9FMX0ProMEX:Q9FMX0PROSITE:PS00088ProteinModelPortal:Q9FMX0Proteomes:UP000006548RefSeq:NP_197722.1scanprosite:PS00088
SMR:Q9FMX0STRING:3702.AT5G23310.1SUPFAM:SSF46609SUPFAM:SSF54719TAIR:AT5G23310tair10-symbols:FSD3UniGene:At.28472
UniProt:Q9FMX0
Coordinates (TAIR10) chr5:+:7850624..7852241
Molecular Weight (calculated) 30362.00 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.53
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)