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AT5G23260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. Paralogous to GOA.
Computational
Description (TAIR10)
TRANSPARENT TESTA16 (TT16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of cell shape, regulation of proanthocyanidin biosynthetic process, seed development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:BT031360EnsemblPlants:AT5G23260EnsemblPlants:AT5G23260.1entrez:832390GeneID:832390
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT5G23260.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF242
HOGENOM:HOG000155301InterPro:IPR002100InterPro:IPR002487ncoils:CoilPaxDb:B2GVM9Pfam:PF00319Pfam:PF01486
Pfscan:PS50066Pfscan:PS51297PRINTS:PR00404PROSITE:PS00350PROSITE:PS50066PROSITE:PS51297ProteinModelPortal:B2GVM9
RefSeq:NP_197717.3scanprosite:PS00350SMART:SM00432SMR:B2GVM9STRING:3702.AT5G23260.2SUPFAM:SSF55455TAIR:AT5G23260
tair10-symbols:ABStair10-symbols:AGL32tair10-symbols:TT16UniGene:At.31019UniProt:B2GVM9
Coordinates (TAIR10) chr5:+:7836442..7838340
Molecular Weight (calculated) 29083.60 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.95
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KQQLENLSRK RRMLEEDNNN MYRWLHEHRA AMEFQQAGID TKPGEYQQFI EQLQCYKPGE
201: YQQFLEQQQQ QPNSVLQLAT LPSEIDPTYN LQLAQPNLQN DPTAQND
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)