AT5G23150.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tudor/PWWP/MBT domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Putative transcription factor. Member of the floral homeotic AGAMOUS pathway.Mutations in HUA enhance the phenotype of mild ag-4 allele. Single hua mutants are early flowering and have reduced levels of FLC mRNA. Other MADS box flowering time genes such as FLM and MAF2 also appear to be regulated by HUA2. HUA2 normally activates FLC expression and enhances AG function. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ENHANCER OF AG-4 2 (HUA2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT domain-containing protein (TAIR:AT5G08230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:7786173..7792080 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 151086.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1392 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPGRKRGAS KAKAKGQLVL GDLVLAKVKG FPAWPAKISR PEDWDRAPDP KKYFVQFFGT EEIAFVAPPD IQAFTSEAKS KLLARCQGKT VKYFAQAVEQ 0101: ICTAFEGLQN HKSNALGDED SLDATEPGLT KAEIVDGTDH IVIESERTDN FNFRVDPCFP KLDENNGEER KAEIRKLDSS SFLESKVKTT SPVSESLEHS 0201: SFDPKIKKED FDKGTDGSAC NEHFGNGQKK LANGKRIKKE AGGSDRKGED TVHRDKSNNS HVPGGRTASG NSDSKKSKGL LTEKTSSKVS ADKHENSPGI 0301: KVGVSGKKRR LESEQGKLAP RVDESSRAAK KPRCESADNK VKCEIDDGSD STGTVSDIKR EIVLGLGARG GNFQYDKEAV AYTKRQRQTM EHATSPSFSG 0401: SRDKSGKGHL EQKDRSSPVR NVKAPAAQSL KKRRAVCIYD EDDDEDPKTP LHGKPAIVPQ AASVLTDGPK RANVCHSTST KAKISAGSTE STEVRKFPLR 0501: KHCEDASRVL PSNAENSTNS LPVVKPINEL PPKDVKQILQ SPKMSPQLVL TNKHVAGQHK VVKSSVKVSG VVMAKKPQSD SCKEAVAGSD KISSSQSQPA 0601: NQRHKSASVG ERLTVVSKAA SRLNDSGSRD MSEDLSAAML DLNREKGSAT FTSAKTPDSA ASMKDLIAAA QAKRKLAHTQ NSIFGNLNPS FLSISDTQGR 0701: SHSPFMVQNA SASAAISMPL VVQGHHQQGS SPSNHGHQSL SRNQIETDDN EERRLSSGHK SVGGSLSCST EAAISRDAFE GMLETLSRTR ESIGRATRLA 0801: IDCAKYGLAS EVVELLIRKL ESESHFHRKV DLFFLVDSIT QHSHSQKGIA GASYVPTVQA ALPRLLGAAA PPGTGASDNR RKCLKVLKLW LERKVFPESL 0901: LRRYIDDIRA SGDDATGGFS LRRPSRSERA VDDPIREMEG MLVDEYGSNA TFQLPGFFSS HNFEDDEEDD DLPTSQKEKS TSAGERVSAL DDLEIHDTSS 1001: DKCHRVLEDV DHELEMEDVS GQRKDVAPSS FCENKTKEQS LDVMEPVAEK STEFNPLPED SPPLPQESPP PLPPLPPSPP PPSPPLPPSS LPPPPPAALF 1101: PPLPPPPSQP PPPPLSPPPS PPPPPPPPSQ SLTTQLSIAS HHQIPFQPGF PPPTYPLSHQ TYPGSMQQDR SSIFTGDQIV QGPGNSSRGG LVEGAGKPEY 1201: FVQQSSSFSP AGVCSSREPS SFTSSRQLEF GNSDVLFNPE ASSQNHRFQP STPLSQRPMV RLPSAPSSHF SYPSHIQSQS QHSYTHPYPF PPQRDDARRY 1301: RNEEPWRIPS SGHSAENQNG AWIHGRNSHP GLPRVTDSFF RPPPERPPSG TMNYQPSAAS NLQAVPAIPG HTAPQMLPSR PDIPTVNCWR PA |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)