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AT5G23120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosystem II stability/assembly factor, chloroplast (HCF136)
Curator
Summary (TAIR10)
encodes a stability and/or assembly factor of photosystem II
Computational
Description (TAIR10)
HIGH CHLOROPHYLL FLUORESCENCE 136 (HCF136); INVOLVED IN: response to cadmium ion, plastid organization, protein complex assembly; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BNR repeat (InterPro:IPR002860), Photosystem II stability/assembly factor, HCF136 (InterPro:IPR016705), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17651eggNOG:COG4447eggNOG:ENOG410ISX6EMBL:AB006708EMBL:AK221097EMBL:AY045691EMBL:BT004549
EMBL:CP002688EMBL:Y15628EnsemblPlants:AT5G23120EnsemblPlants:AT5G23120.1entrez:832376GeneID:832376Genevisible:O82660
GO:GO:0006461GO:GO:0009507GO:GO:0009523GO:GO:0009533GO:GO:0009534GO:GO:0009535GO:GO:0009570
GO:GO:0009579GO:GO:0009657GO:GO:0009735GO:GO:0009941GO:GO:0015979GO:GO:0031977GO:GO:0046686
Gramene:AT5G23120.1hmmpanther:PTHR32010hmmpanther:PTHR32010:SF6HOGENOM:HOG000232521InParanoid:O82660IntAct:O82660InterPro:IPR016705
InterPro:IPR028203KEGG:ath:AT5G23120OMA:HGWLVGTPaxDb:O82660Pfam:O82660Pfam:PF14870PhylomeDB:O82660
PIR:T51828PIRSF:PIRSF017875PRIDE:O82660PRO:PR:O82660ProteinModelPortal:O82660Proteomes:UP000006548RefSeq:NP_197703.1
SMR:O82660STRING:3702.AT5G23120.1SUPFAM:SSF110296TAIR:AT5G23120tair10-symbols:HCF136UniGene:At.5360UniProt:O82660
World-2DPAGE:0003:O82660
Coordinates (TAIR10) chr5:+:7778154..7780463
Molecular Weight (calculated) 44105.90 Da
IEP (calculated) 7.49
GRAVY (calculated) -0.29
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLQLCDGY LLFKPSVSPR FLSQRISHRL IPKASSSPPP SPSPSSSSSS LSFSRRELLY QSAAVSLSLS SIVGPARADE QLSEWERVFL PIDPGVVLLD
101: IAFVPDEPSR GFLLGTRQTL LETKDGGSTW NPRSIPSAEE EDFNYRFNSI SFKGKEGWII GKPAILLYTA DAGENWDRIP LSSQLPGDMV FIKATEDKSA
201: EMVTDEGAIY VTSNRGYNWK AAIQETVSAT LNRTVSSGIS GASYYTGTFS AVNRSPDGRY VAVSSRGNFF LTWEPGQPYW QPHNRAVARR IQNMGWRADG
301: GLWLLVRGGG LYLSKGTGIT EEFEEVPVQS RGFGILDVGY RSEEEAWAAG GSGILLRTRN GGKSWNRDKA ADNIAANLYA VKFVDDKKGF VLGNDGVLLR
401: YVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)