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AT5G23110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.603
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger, C3HC4 type (RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGINeggNOG:ENOG410XQZMEMBL:AB006708EMBL:CP002688EnsemblPlants:AT5G23110EnsemblPlants:AT5G23110.1entrez:832375
Gene3D:3.30.40.10Gene3D:3.30.565.10GeneID:832375GO:GO:0008270GO:GO:0009506Gramene:AT5G23110.1hmmpanther:PTHR15600
hmmpanther:PTHR15600:SF28HOGENOM:HOG000241119InterPro:IPR001841InterPro:IPR003594InterPro:IPR013083KEGG:ath:AT5G23110KO:K17592
OMA:IFDKREHPfam:PF13920Pfscan:PS50089PhylomeDB:Q9FN44PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_197702.1
SMART:SM00184SMR:Q9FN44STRING:3702.AT5G23110.1SUPFAM:SSF55874SUPFAM:SSF57850TAIR:AT5G23110UniGene:At.27852
UniProt:Q9FN44
Coordinates (TAIR10) chr5:+:7758307..7775509
Molecular Weight (calculated) 527280.00 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.08
Length 4706 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSLLLEDFG QKVDLTRRIR EVLLNYPEGT TVLKELIQNA DDAGATKVRL CLDRRVHGSG SLLSDSLAQW QGPSLLAYND AVFTEEDFVS ISRIGGSGKH
0101: GQAWKTGRFG VGFNSVYHLT DIPSFVSGKY VVLFDPQGAY LPNISAANPG KRIDYVGSSA LSQYKDQFLP YCAFGCDMRS PFNGTLFRFP LRNTEQAASS
0201: RLSRQAYFED DISLMFDQLF EEGVFSLLFL KCVLSIEMYT WDDGDSEPKK LYSCSVSSPN NDTVWHRQAV LRLSKTSISG DREMDAFTLE FLSESEKGNQ
0301: TKRRTDRFYI VQTMASASSK IGLFAATASK EYDIHLLPWA SVAACISDDS SENNILKLGH AFCFLPLPVR TGLTVQVNGY FEVSSNRRGI WYGEDMDRSG
0401: KVRSAWNRLL LEDVVAPSFA RLLLCLREVL DSRDSYFSLW PSGSFEAPWS ILVEQIYKNI CNAPVLFSDL DGGKWVSPAD AYLHDEEFSG SKDLGDALLQ
0501: LEMPIVCLPR LVFDMLLKHP SFLLPKVVTP DRVRNFLKEC KTLSALKKSL KLVLLEYCLD DLTDDSVCTQ ASNLKLLPLA NGDFGFFSGR TGSVSYFICD
0601: ELEHMLLQKV YDRVIDKNIP PPLYTRLFAI AESRTANVAI FSIHNLLQLF PRLVPAEWKH RSKISWHPES NRDHPSSSWF VLFWQYLDKR CQSLSLFCDW
0701: PILPSTSGYL YIASPQSKLI NAEKLPAAVR NVLEKIGGKI LNNNIKVEHS DLSSFVSDAS YTGVLESIFD AASSDLDGVQ NLIYDLNAQE KDELRSFLLD
0801: PKWHIGHQIG DLYLRICKIL PIHRIYGETS AQESKYSDLV NPPKHLPPLD VPACLLGCEF ILCCQGSEED VLSRYYGIER MRKSNFYRQN VFNRIEVLQP
0901: EIRDQVMISI LQDLPQLCLE DRLLREELQN LEFVPTVNGP LKRPSVLHDP RNEELYALLE DSDCFPASGF QGSAILDMLQ GLGLKTTVSP ETILESARLV
1001: ERLMHKDLEK AHSRGKVLFS FLEVNAVKWL PDQSSEDDGA INRIFSRAAT AFRPRNLTCN LVKFWSELKM ICWCPVLVSA PFQTLPWPVV TSTVAPPKLV
1101: RPKTDMWLVS ASMRILDGEC SSTALAYNLG WLSHPGGSAI AAQLLELGKN NEILIDQVLR QELALAMPKI YSILARLLGS DEMDIVKAVL EGSRWIWVGD
1201: GFATLSEVVL DGPLQLVPYI RVIPTDLAVF RGLFVELGVR EFLTPSDYAD VLCRIAVRKG TSPLDPQEIR AAVLIAQQLA EAQFLDKVTI YLPDVSGRLF
1301: PSSDLVYNDA PWLTASDNLN SSFSAESTML LNAKRTMQKF VHGNISNEVA EKLGVRSLRR VLLAESADSM NFSLSGAAEA FGQHEALTTR LKHILEMYAD
1401: GPGILFELVQ NAEDAGASEV TFLLDKTHYG TSSLLSPEMA DWQGPALYCF NNSVFTQQDM YAISRIGQAS KLEKPFAIGR FGLGFNCVYH FTDIPGFVSG
1501: ENIVMFDPHA NHLPGISPTH PGLRIKFAGR YILDQFPDQF APFLHFGCDL EHTFPGTLFR FPLRNASVAP RSHIKKETYA PEDVLSLFTS FSGVVSEALI
1601: FLRNVKTVSI FTKEGAGHEM QLLHRVCKDH NVGQDTEPKP SSQVFSLLDE NIFAGMNKDQ LLKKLSNTVV KDLPYKCQKI VVTEQDSSGC ILHGWITGEC
1701: LNAGVSKKNL NLPEMSHKLI PWASVAVHIN SVKNENVEDL AASISNIFGP STISIQNRRN FGGRAFCFLP LPITTGLPAH INAYFELSSN RRDLWFGNDM
1801: AGDGKVRSDW NLYLIEEVVV PAYGHLLEKI ASELGPCDLF FSVWPVTLGT EPWASLVRKL YSFIANNGLR VLYTKARGGQ WISTKQAIYP DFSFPKADEL
1901: VDVLADAGLP VINISKTVAE RFGEACSSLH LMTPQLLRTL LTRRKREFRD RNGLALALEY CLLDLKVPFL ADLLYGLPLL PLADGSFTTF NKNGTAERIF
2001: FAEEIGYELL KDSLPHQLVD REVPEGVYSK LLAVAQSGES CICLLSCNLL EKLFFKLLPA DWHLSEKILW TPGQRGHPTV EWIRVLWSYL KLSCDDLSVF
2101: SKWPILPVED GCLMQLILNS NVIRDDGWSE NMSSLLLKCG CRFLNRELPV EHPQLETFVQ PPTATGILNA LLAISGGHEN IKGIFLNVSE GELHELRNFI
2201: LQSKWFSGGH MNEVHFETIK HLPIFESYRS RKLVSLNCPV KWLKPDGIRE DLLDDDFVRL DSERERTIFK RYLQIKEPSK MEFYKACVLN RMSEFLSQQE
2301: ALLAILHDLN DLVVADVSLQ CAISTTPFVL AANGLWQQPS RLYDPRVPAL QELLHKEVYF PSEKFSDSKI LDALVGLGLR TTLDCSTYLD AARSVSMLHD
2401: LGDLEASRYG RRLLFHIKTL SIKLSSKTGE ANHDESQNIM SITSEDSFDG ETYPEYETET SYLGSLLTQQ SEDEFWCQLR SIPWCPICLD PPIEGIPWLE
2501: SSNLVASPDR VRPKSQMFLV SATMHLLDGE CQSSYLHQKL GWMDCLTIDI LCRQLIEISK SYKEQKSRSS VNPEFESMLQ SQIPLLYTRL QELSRENDFL
2601: ALKSALSGVP WVWLGDDFVS ADVLSFDSPV KFTPYLYVVP SELSDFKELL LELGVRLSFD AADYMNTLQH LQNDIKGSQL TDEQINFVLC VLEAVADCFS
2701: EVSSDSDNNS VLVPDSAGFL VPLEDLVYND APWVDSSSLS GKRFVHPSIN SDMANRLGIQ SLRCISLVDN DITQDLPCMD FTKLKELLSL YASKDFLLFD
2801: LLELADCCKV KKLHIIFDKR EHPRKTLLQH NLGEFQGPAI VAILEGVTLT REEICSLQLL SQWRIKGETL NYGLGLLSCY FMCDLLSIVS GGYFYMFDPQ
2901: GATLSASTTQ APAGKMFSLI GTNLVERFSD QFNPMLIGQD KAWSLTDSTI IRMPLSTEIL KDGFEAGLDR VKQISDQFLE NASRILIFLK SVSQVSFSTW
3001: EQGNAQPHQD YTLHIDSASA IMRNPFAEKN LKTSKLSRIF GSSNSGVKSR IIEVNLHIGE NKLLDRWLVV LSKGSGQSQN MARGRKYLAY NLTPVAGVAA
3101: HVSRNGRPVD VHAASPIMSP LPLSGSVNLP VTILGCFLIR NNCGRFLFKN KNERAMSEPQ LDAGDILIDA WNKELMSCVR DSYIEIVVEM ERLSREHSSS
3201: STESSTARQL ALSLKAYGHQ LYSFWPRSNQ HDDAIEAEVL KPEWECLVEQ VIRPFYARVA DLPLWQLYSG SLVKAEEGMF LTQPGSEVAV NLLPLTVCSF
3301: VKEHYPVFSV PWELLAEVQA VGIPVREVKP KMVRVLLRKS SASIDLRSVD TFIDVLEYCL SDIQFIEALN PEEANMDEGN STSTSSSMST QAQAGSSDAF
3401: EMMTSLGKAL FDFGRVVVED IGRTGDSIGQ RISNNRYSNA DPRFLSAVNE LKGLPCPTAT NHLARLGISE LWLGNKEQQA LMLPVSARFI HPKVFERSSL
3501: ADIFLKSSVQ AFLKLRSWSL PLLASNMKYL FHDHWVSYIS ESNSVPWFSW ESTSSSSDDS GPSPEWIQLF WKNFNGSADE LSLFSDWPLI PAFLGRPILC
3601: RVRERHLIFF PPPALQPVSR SGTDMHQTDS DISTTSVSGG PLSELTQRYV SGFDLAQSKH PWLILLLNQC NIPVCDTAYI DCAERCKCLP SPSVSLGQAI
3701: ASKLAEGKRA GYIADIASFP TFGRDELFTL LANDFSSSGS SYQAYELEVL SSLPIFKTVT GSYTHLQRHG LCIISGDSFL KPYDECCFCY LPDSVECHFL
3801: QALGVTVLHN HQTLVRFGLA EFESRSQSER EDILIYVYGN WLDLEVDSDV IEALREAKFV RNSDEFSSEL SKSKDLFDPS DTLLVSVFFG ERKRFPGERF
3901: SSEGWLRILR KAGLRTAAEA DVILECAKRV EFLGNERNRS SEEDDFETDL VHSEKDISVE LSTLAGSVIE AILLNFAGFY STAFCNTLGQ IACVPAESGF
4001: PSLGGRKGGK RVLTRYSEAV LLRDWPLAWS SVPILSTQRF IPPGFSWTAL RLKSPPIFST VLKHLQVIGR NGGEDTLAHW PNDPNVMTID VTSCEVLKYL
4101: EIVWDSLTTS DILELQKVAF LPAANGTRLV GASSLFVRLP INLSPFAFEL PSLYLPFLNI LKDLGLNDVL SVAAAKDILS KLQKLCGYRR LNPNELRAVM
4201: EILHFLCDEI NTTKPPEINT IKSDVIVPDD GCRLVHALSC VYVDSFGSRY VRYIDTARLR LVHPLLPERI CLDLGVRKLS DVVIEELENA EHIETLDNIG
4301: SISLKAVRRK LQSETFQAAL WTVSRQATTV DDLSFEVMQH SLQSAAEKIG FVRNIYTRFL LLPNSVDVTF VAKESMIPEW ENESHHRTMY FINRHRTSIL
4401: VSEPPGYISF LDVMATVVSE VLGFPTSLPI GSLFSCPEGS ETEITAYLRL CSYSLTNTGT ADSSVGQEIM PQDAVQVQLH PLRPFYKGEI VAWKIKQGDK
4501: LRYGRVPEDV RPSAGQALYR LKVEMTPGET GLLLSSQVFS FRGTSIENEG PSTLPEVLPA VSDKKSQEIS ESSRTNKTSS SQPVNEMQLG RVTAKELVEA
4601: VHEMLSAAGI NMELENQSLL QRTLTLQEEL KDSKVAFLLE QERAEASMKE AETAKSQWLC QICQTKEVEV TIVPCGHVLC RHCSTSVSRC PFCRLQVNRT
4701: IRIFRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)