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AT5G23070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Thymidine kinase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thymidine kinase; FUNCTIONS IN: thymidine kinase activity, ATP binding; INVOLVED IN: pyrimidine deoxyribonucleoside interconversion, anaerobic respiration; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thymidine kinase (InterPro:IPR001267), Thymidine kinase, conserved site (InterPro:IPR020633); BEST Arabidopsis thaliana protein match is: Thymidine kinase (TAIR:AT3G07800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G23070-MONOMERBioCyc:MetaCyc:AT5G23070-MONOMERBRENDA:2.7.1.21EC:2.7.1.21
eggNOG:COG1435eggNOG:KOG3125EMBL:AB006708EMBL:CP002688
EnsemblPlants:AT5G23070EnsemblPlants:AT5G23070.1entrez:832371GeneID:832371
GO:GO:0004797GO:GO:0005524GO:GO:0005737GO:GO:0009157
GO:GO:0042802GO:GO:0046872GO:GO:0071897Gramene:AT5G23070.1
hmmpanther:PTHR11441hmmpanther:PTHR11441:SF2HOGENOM:HOG000076390InParanoid:F4KBF5
InterPro:IPR001267InterPro:IPR020633InterPro:IPR027417KEGG:00240+2.7.1.21
KEGG:00983+2.7.1.21KEGG:ath:AT5G23070KO:K00857MINT:MINT-8411757
OMA:TMRKTEEPANTHER:PTHR11441PaxDb:F4KBF5Pfam:PF00265
PRIDE:F4KBF5PROSITE:PS00603ProteinModelPortal:F4KBF5Proteomes:UP000006548
Reactome:R-ATH-73614RefSeq:NP_568426.1scanprosite:PS00603SMR:F4KBF5
STRING:3702.AT5G23070.1SUPFAM:SSF52540SUPFAM:SSF57716TAIR:AT5G23070
UniGene:At.49050UniGene:At.71128UniProt:F4KBF5
Coordinates (TAIR10) chr5:+:7741979..7742827
Molecular Weight (calculated) 31227.30 Da
IEP (calculated) 8.28
GRAVY (calculated) -0.22
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGVSMRTLI SPSLAPFSLH LHKPSLFSTA LRFSFSINNI TPTNSPPSTI STRKLQTKAT RVTSSSSSQP LSSSSPGEIH VVVGPMFSGK TTTLLRRILA
101: ERETGKRIAI IKSNKDTRYC TESIVTHDGE KYPCWSLPDL SSFKERFGFD DYENRLDVIG IDEAQFFGDL YEFCREAADK EGKTVIVAGL DGDFMRRRFG
201: SVLDLIPIAD TVTKLTSRCE VCGKRALFTM RKTEEKETEL IGGAEVYMPV CRSHYVCGQN VLETARAVLD SSNNHSVVAS SL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)