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AT5G23030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.952
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : tetraspanin12
Curator
Summary (TAIR10)
Member of TETRASPANIN family
Computational
Description (TAIR10)
tetraspanin12 (TET12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin11 (TAIR:AT1G18520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17642eggNOG:ENOG410JTKMeggNOG:ENOG41107RJEMBL:AB006708
EMBL:BT010941EMBL:BT011655EMBL:CP002688EnsemblPlants:AT5G23030
EnsemblPlants:AT5G23030.1entrez:832367GeneID:832367Genevisible:Q9FN51
GO:GO:0016021Gramene:AT5G23030.1hmmpanther:PTHR32191hmmpanther:PTHR32191:SF2
HOGENOM:HOG000238911InParanoid:Q9FN51InterPro:IPR018499KEGG:ath:AT5G23030
OMA:PPVECGFPaxDb:Q9FN51Pfam:PF00335Pfam:Q9FN51
PhylomeDB:Q9FN51PRO:PR:Q9FN51ProteinModelPortal:Q9FN51Proteomes:UP000006548
RefSeq:NP_197694.1STRING:3702.AT5G23030.1TAIR:AT5G23030tair10-symbols:TET12
TMHMM:TMhelixUniGene:At.31027UniProt:Q9FN51
Coordinates (TAIR10) chr5:+:7726819..7727709
Molecular Weight (calculated) 29500.70 Da
IEP (calculated) 10.06
GRAVY (calculated) 0.49
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRLSNAAVI TTNAILALIG LAALSFSVYV YVQGPSQCQR FVQNPLIVTA ALLFFISSLG LIAALYGSHI IITLYLFFLF LSILLLLVLS VFIFLVTNPT
101: AGKALSGRGI GNVKTGDYQN WIGNHFLRGK NWEGITKCLS DSRVCKRFGP RDIDFDSKHL SNVQFGCCRP PVECGFESKN ATWWTVPATA TTAIIGDCKA
201: WSNTQRQLCY ACESCKIGVL KGIRKRWRIL IVVNLLLILL VVFLYSCGCC VRKNNRVPWK RRFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)