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AT5G22950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.886
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNF7 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VPS24.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT3G45000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17634eggNOG:COG5491eggNOG:KOG3229EMBL:AB005243EMBL:AF083749EMBL:AK220831EMBL:AY054614
EMBL:AY128742EMBL:CP002688EnsemblPlants:AT5G22950EnsemblPlants:AT5G22950.1entrez:832359GeneID:832359Genevisible:Q9FFB3
GO:GO:0000815GO:GO:0005770GO:GO:0005829GO:GO:0007034GO:GO:0015031GO:GO:0070676Gramene:AT5G22950.1
hmmpanther:PTHR10476hmmpanther:PTHR10476:SF10HOGENOM:HOG000177219InParanoid:Q9FFB3IntAct:Q9FFB3InterPro:IPR005024iPTMnet:Q9FFB3
KEGG:ath:AT5G22950KO:K12193ncoils:CoilOMA:PEISATMPaxDb:Q9FFB3Pfam:PF03357Pfam:Q9FFB3
PhylomeDB:Q9FFB3PRIDE:Q9FFB3PRO:PR:Q9FFB3ProteinModelPortal:Q9FFB3Proteomes:UP000006548Reactome:R-ATH-1632852Reactome:R-ATH-917729
RefSeq:NP_197686.1SMR:Q9FFB3STRING:3702.AT5G22950.1TAIR:AT5G22950tair10-symbols:VPS24.1UniGene:At.8736UniProt:Q9FFB3
Coordinates (TAIR10) chr5:+:7681380..7682720
Molecular Weight (calculated) 25998.20 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.67
Length 229 amino acids
Sequence (TAIR10)
(BLAST)
001: MERVMNIIKP KPDPKQLLRD WQRKLRQECR NIERQIRDIQ KEERNVQKAI KEAAKRNDMV SAKALAKEIV SSRRTVNRLY ENKAQMNSIS MHLGESVAIA
101: RTVGHLSKSA EVMKLVNNLM KAPQMAATMQ EFSKEMTKAG VIEEFVNEAI DNALDSEDME EEIDEEVDKV LTAIAGETAA ELPVAVRKER IKVPAQKAST
201: SREEEAVAEG VDDEEELEEI RARLAKVRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)