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AT5G22890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G34370.1); Has 32454 Blast hits to 15503 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 30756; Fungi - 38; Plants - 696; Viruses - 0; Other Eukaryotes - 964 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:AK227740EMBL:CP002688EnsemblPlants:AT5G22890EnsemblPlants:AT5G22890.1entrez:832353
Gene3D:3.30.160.60GeneID:832353GO:GO:0003676GO:GO:0003700GO:GO:0006355GO:GO:0010200GO:GO:0046872
Gramene:AT5G22890.1hmmpanther:PTHR10593hmmpanther:PTHR10593:SF41HOGENOM:HOG000240637InterPro:IPR007087InterPro:IPR013087InterPro:IPR015880
KEGG:ath:AT5G22890OMA:ASSMLYTPfam:PF12171Pfscan:PS50157PhylomeDB:Q0WT24PROSITE:PS00028PROSITE:PS50157
Proteomes:UP000006548RefSeq:NP_197680.2scanprosite:PS00028SMART:SM00355SMR:Q0WT24STRING:3702.AT5G22890.1SUPFAM:SSF57667
TAIR:AT5G22890UniGene:At.31036UniProt:Q0WT24
Coordinates (TAIR10) chr5:-:7653541..7654662
Molecular Weight (calculated) 42252.00 Da
IEP (calculated) 8.53
GRAVY (calculated) -0.65
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)