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AT5G22850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G08210.1); Has 4888 Blast hits to 4872 proteins in 390 species: Archae - 0; Bacteria - 0; Metazoa - 1696; Fungi - 940; Plants - 1998; Viruses - 1; Other Eukaryotes - 253 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-672-MONOMEReggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AK228200EMBL:CP002688EnsemblPlants:AT5G22850EnsemblPlants:AT5G22850.1
entrez:832348Gene3D:2.40.70.10GeneID:832348GO:GO:0004190Gramene:AT5G22850.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF348
InterPro:IPR001461InterPro:IPR021109InterPro:IPR032799InterPro:IPR032861InterPro:IPR033121KEGG:ath:AT5G22850KO:K00924
MEROPS:A01.A56OMA:YDLANMRPANTHER:PTHR13683Pfam:PF00026Pfam:PF14541Pfam:PF14543Pfscan:PS51767
PhylomeDB:Q0WRU5PRINTS:PR00792PROSITE:PS51767Proteomes:UP000006548RefSeq:NP_197676.2SMR:Q0WRU5STRING:3702.AT5G22850.1
SUPFAM:SSF50630TAIR:AT5G22850TMHMM:TMhelixUniGene:At.31040UniGene:At.75137UniProt:Q0WRU5
Coordinates (TAIR10) chr5:-:7633717..7636298
Molecular Weight (calculated) 52340.50 Da
IEP (calculated) 4.50
GRAVY (calculated) 0.24
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAIRFAAAI LICCLLPAAV LSYGFPAALK LERVIPANHE MELSQLKARD EARHGRLLQS LGGVIDFPVD GTFDPFVVGL YYTKLRLGTP PRDFYVQVDT
101: GSDVLWVSCA SCNGCPQTSG LQIQLNFFDP GSSVTASPIS CSDQRCSWGI QSSDSGCSVQ NNLCAYTFQY GDGSGTSGFY VSDVLQFDMI VGSSLVPNST
201: APVVFGCSTS QTGDLVKSDR AVDGIFGFGQ QGMSVISQLA SQGIAPRVFS HCLKGENGGG GILVLGEIVE PNMVFTPLVP SQPHYNVNLL SISVNGQALP
301: INPSVFSTSN GQGTIIDTGT TLAYLSEAAY VPFVEAITNA VSQSVRPVVS KGNQCYVITT SVGDIFPPVS LNFAGGASMF LNPQDYLIQQ NNVGGTAVWC
401: IGFQRIQNQG ITILGDLVLK DKIFVYDLVG QRIGWANYDC STSVNVSATS SSGRSEYVNA GQFSENAAAP QKLSLDIVGN TLMLLLMVIN MFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)